PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0376641
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 231aa    MW: 25247.1 Da    PI: 5.1455
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0376641genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-1971121155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             + y+GVr++  +g+Wv+e+r+p   +k++r++lg+f tae+Aa+a++ a+ +l+g
  RcHm_v2.0_Chr1g0376641  71 PVYRGVRRRN-SGKWVCEVREP---NKKTRIWLGTFPTAEMAARAHDVAAISLRG 121
                             68*****888.8******9998...347*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MDGGFSAFPQ YYDHNTQYPF GSDLPESSSH SDNNSGNGVG RMNLSDEEVM LAATYPKKRA  60
GRKKFKETRH PVYRGVRRRN SGKWVCEVRE PNKKTRIWLG TFPTAEMAAR AHDVAAISLR  120
GRSACLNFAD SAWRLPVPAS TSAKDIQTAA AQAAEAFRPT GEESEVVSGS VAATEAESEP  180
VFCMDEEDVF GMPGLLANMA EGMLLSPPHY NGYGGDDMEG YADVSLWSYS I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.15e-76ERF family protein