PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0371151
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 384aa    MW: 42333.1 Da    PI: 4.525
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0371151genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-1879129155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta +Aa a+++a+k+++g
  RcHm_v2.0_Chr1g0371151  79 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAVDAALAYDEAAKAMYG 129
                             56*****999.**********8...3.35************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    
MGAYDQGSNG FSQPLGSSKK RGRRSKKDGA SVVETLSRWK EYNNLLESGI YDDKARKIQA  60
KGSKKGCMKG KGGPENQRCN YRGVRQRTWG KWVAEIREPN RGSRLWLGTF PTAVDAALAY  120
DEAAKAMYGA TARLNHPNVN SHNSYTSSWN DSSHETSSVT TPSGCSTVAT QGCCESTMIS  180
NQSDHSEVCA EEESFIVKTE DGEDESTSHN AFTQPRTSNA TADVEVKSEV PMDYFHTDQP  240
GVQEQAHDWI STDGFDMDYL KQFSIDELFD VDELVGPMDG KPIPAPRLQQ DLSSDVGRPQ  300
FTDMVPVDNN ATLSDSSYQL QYPDDKPPGG NVQHMDVEPS VADYGFDLLN RQMQENNVGV  360
DNHGYFNVDD FDFNFTGGCG GNAN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.18e-36ERF family protein