PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0362971

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 1612aa MW: 178226 Da PI: 6.3997

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0362971	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00061	1500	1525	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C++sF +k++L++H r+ + RcHm_v2.0_Chr1g0362971 1500 HSCNlgGCSMSFQTKEELMVHKRNrC 1525 689999****************9876 PP
2	zf-C2H2	11.3	0.0011	1583	1609	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H RcHm_v2.0_Chr1g0362971 1583 YKCKvdGCGLSFRFVSDFSRHRRKtgH 1609 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1612 aa Download sequence
MGDVKIPNWL KGLPLAPEFH PTHTEFADPI AYISKIEKEA SEFGICKIIP PLPKPSKRYV 60 FSNLNKSLAK RPELGSDLIP GNDGDAVKVG SGDGSNDGEV RAVFTTRHQE LGQTVKRAKG 120 AGVQDPPPSG VDKQVWQSGE VYTLEQFESK SRAFARSILG TIRDVSPLVI EAMFWKAASE 180 KPIYIEYAND VPGSAFEEPE GLLCYSRRRR RKRNSYHRSG PNSDSKKSEM ISSCERKSQN 240 GEVEDASPKN VSLTSVEVPK SSALPGIVST DETSQSSRKK SQNSSCDVEG TAGWKLSNSP 300 WNLQVIARSP GSLTRFMPDD IPGVTSPMVY IGMLFSWFAW HVEDHELHSM NFLHNGSAKT 360 WYSVPGDYAF AFEELIRTEA YGGTADRLAA LSLLGNKTTL MSPEVVIASG IPCCRLIQNP 420 GEFVVTFPRA YHVGFSHGFN CGEAANFGTP QWLKVAKEAA VRRAAMNYLP MLSHQQLLYL 480 STMSFVSRVP KSLLPGVRSS RMRDRQKEDR ELSVKKAFIE DILNENDVLS ALLGKESSCR 540 AVLWNPDLLP NASKESSIPT ASAPVDTNSK ENATDTQGGN STNDQNFLVD EMSLYMENLN 600 DLYLGSDDLS DDFQVDSGTL ACVACGILGF PFMSVVQPSE KASMELQPEC ILAEELPGVS 660 GNSHISPEHS KSFKGCATED LSPISNAFPH ARDPVLPCTA RFNNCWNTVD KFLRPRSFCL 720 EHAVETLELL QCKGGANMLV ICHSDYQKIK APAAAIAEEI GCPFNYNEVP LDIASNEDLN 780 LIDLAVDDGR DECGEDWTSK LGINLRHCVK VRKSSSSKRV QHALALGEVF SKQSRSSEFL 840 AVNWKSRRSR TKKVYLDAPY KQCDSIDKKK EEVVEAKSAD ATSFKREAKI IQYSRRNKRK 900 PSTSTGAGRF VEHPGTSEEL DKHSRRASDN SIYNNGKSTS ICARLDSFTS DSTEMHPDVQ 960 MLEATRDICL DSTLSQVADT VALTAGSADA QIENRSLEER NMNGGGCNLA ASESDMQDEI 1020 KILKEARQNN SIIPLVIARD ERSEKHRGEQ ENEKLNKNDD NCNLVSEGQS QLWSQEDVLM 1080 NVVSVFTKST NLSAADSIVT SSEEQIVNAV IEKSCVNSEV CESMTLGDEV QQEIQTTNRS 1140 NDKAPVSCSS TLLNDPTFAA AECHVEFDRE THIVEEFSNV VSSEFKPEED IEIPKGRYEK 1200 PSLSPTRRVG QHSPASTDRL SGVAKAFCAA ADFQPGPTSH GEEFQAADRT SEGEYISTSM 1260 IKMEETHPSS LEESSEVPRG SSLEEGTSSG VTSATLVQQD AQTTNAAVEA PSHNFVVRGE 1320 NQPIPVSVED EVPRVSCAID VTLDDKERWT NSYSNKELIA SHDTSKCEPS RVTIKTYFRV 1380 KRGSRAAREL HNGTEVCISQ HDRELGNIEP SILDPRPSPE IGSKRKRGVG QKMDDNSNFN 1440 GYIRGPCEGL RPRAAKDATV SRIDIHNQVE EQPVAKKVKR PSDVPVPPKD KKKEQVRKPH 1500 SCNLGGCSMS FQTKEELMVH KRNRCPHEGC GKKFSCHKYA MVHSRVHDSA RPFKCPWKGC 1560 SMSFKWAWAQ TEHIRVHTGE KPYKCKVDGC GLSFRFVSDF SRHRRKTGHY VS

Sequence ? help Back to Top

Protein Sequence Length: 1612 aa Download sequence

MGDVKIPNWL KGLPLAPEFH PTHTEFADPI AYISKIEKEA SEFGICKIIP PLPKPSKRYV  60
FSNLNKSLAK RPELGSDLIP GNDGDAVKVG SGDGSNDGEV RAVFTTRHQE LGQTVKRAKG  120
AGVQDPPPSG VDKQVWQSGE VYTLEQFESK SRAFARSILG TIRDVSPLVI EAMFWKAASE  180
KPIYIEYAND VPGSAFEEPE GLLCYSRRRR RKRNSYHRSG PNSDSKKSEM ISSCERKSQN  240
GEVEDASPKN VSLTSVEVPK SSALPGIVST DETSQSSRKK SQNSSCDVEG TAGWKLSNSP  300
WNLQVIARSP GSLTRFMPDD IPGVTSPMVY IGMLFSWFAW HVEDHELHSM NFLHNGSAKT  360
WYSVPGDYAF AFEELIRTEA YGGTADRLAA LSLLGNKTTL MSPEVVIASG IPCCRLIQNP  420
GEFVVTFPRA YHVGFSHGFN CGEAANFGTP QWLKVAKEAA VRRAAMNYLP MLSHQQLLYL  480
STMSFVSRVP KSLLPGVRSS RMRDRQKEDR ELSVKKAFIE DILNENDVLS ALLGKESSCR  540
AVLWNPDLLP NASKESSIPT ASAPVDTNSK ENATDTQGGN STNDQNFLVD EMSLYMENLN  600
DLYLGSDDLS DDFQVDSGTL ACVACGILGF PFMSVVQPSE KASMELQPEC ILAEELPGVS  660
GNSHISPEHS KSFKGCATED LSPISNAFPH ARDPVLPCTA RFNNCWNTVD KFLRPRSFCL  720
EHAVETLELL QCKGGANMLV ICHSDYQKIK APAAAIAEEI GCPFNYNEVP LDIASNEDLN  780
LIDLAVDDGR DECGEDWTSK LGINLRHCVK VRKSSSSKRV QHALALGEVF SKQSRSSEFL  840
AVNWKSRRSR TKKVYLDAPY KQCDSIDKKK EEVVEAKSAD ATSFKREAKI IQYSRRNKRK  900
PSTSTGAGRF VEHPGTSEEL DKHSRRASDN SIYNNGKSTS ICARLDSFTS DSTEMHPDVQ  960
MLEATRDICL DSTLSQVADT VALTAGSADA QIENRSLEER NMNGGGCNLA ASESDMQDEI  1020
KILKEARQNN SIIPLVIARD ERSEKHRGEQ ENEKLNKNDD NCNLVSEGQS QLWSQEDVLM  1080
NVVSVFTKST NLSAADSIVT SSEEQIVNAV IEKSCVNSEV CESMTLGDEV QQEIQTTNRS  1140
NDKAPVSCSS TLLNDPTFAA AECHVEFDRE THIVEEFSNV VSSEFKPEED IEIPKGRYEK  1200
PSLSPTRRVG QHSPASTDRL SGVAKAFCAA ADFQPGPTSH GEEFQAADRT SEGEYISTSM  1260
IKMEETHPSS LEESSEVPRG SSLEEGTSSG VTSATLVQQD AQTTNAAVEA PSHNFVVRGE  1320
NQPIPVSVED EVPRVSCAID VTLDDKERWT NSYSNKELIA SHDTSKCEPS RVTIKTYFRV  1380
KRGSRAAREL HNGTEVCISQ HDRELGNIEP SILDPRPSPE IGSKRKRGVG QKMDDNSNFN  1440
GYIRGPCEGL RPRAAKDATV SRIDIHNQVE EQPVAKKVKR PSDVPVPPKD KKKEQVRKPH  1500
SCNLGGCSMS FQTKEELMVH KRNRCPHEGC GKKFSCHKYA MVHSRVHDSA RPFKCPWKGC  1560
SMSFKWAWAQ TEHIRVHTGE KPYKCKVDGC GLSFRFVSDF SRHRRKTGHY VS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	213	RRRRRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein