PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0358681
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 301aa    MW: 34129.1 Da    PI: 4.8056
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0358681genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-1996146256
                     AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                             +++GVr+++ +g+W+AeIrd +     r  r++lg+f taeeAa  +++a+ +l+g+
  RcHm_v2.0_Chr1g0358681  96 KFRGVRQRP-WGKWAAEIRDpV-----RkSRVWLGTFQTAEEAALVYDRAAIQLRGH 146
                             89*******.**********44.....55**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MDSNYPTKYT EKRTLTKKLV KHFPNVAVPK IVRISVTDED ATDTSSDEEE QDQQQQRLTK  60
RVINEVRIEE ESEAVRVLLA KNQKPKPKPL PEEKRKFRGV RQRPWGKWAA EIRDPVRKSR  120
VWLGTFQTAE EAALVYDRAA IQLRGHNALT NIIAPPSKIL ISDHDSSSNE SSSINNLSCS  180
NASSSIDHIV VIDEYDCGKE CQSIRSPTSV LSGSDNEWRP GSKEQDETHF VKDYGYFDGV  240
ISPTEAIFFG VTEPILLEDM NLVPETMLRD DLSDISLDSV GDFRSCKWNV EDFFQDQCGG  300
F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.11e-32ERF family protein