PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0350911
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 584aa    MW: 66057.3 Da    PI: 4.4058
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0350911genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.91.3e-12411655127
                     NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLp.k....kvkaeekewyfFskrdkkya..tgkrknratksgyW 83 
                             + F Ptd+ lv + L+      + +   +i+++d++   ePw++  +      + + +e+yfF+++ kk +   g+r nr++  g W
  RcHm_v2.0_Chr1g0350911  41 MSFIPTDSLLVRFILHD-----SAPN-FIITDCDLFGQeEPWEIWdRylgfLNQYNPDELYFFMPSLKKLSpnGGSRINRTIGGGSW 121
                             45999999999554443.....3333.3699**9986549****6335654222355699****999987743589*********** PP

                     NAM  84 katgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                              ++   k v++   +g+ +g+k+ L +++  + + ++ +W+++ey+
  RcHm_v2.0_Chr1g0350911 122 TQKEPIKFVCDDedEGRSIGVKRKLRYHN--QGSDQHVQWCLDEYT 165
                             **9999999988778888**********4..4444689*******7 PP
2NAM38.24.5e-122033344127
                     NAM   4 Gfr..FhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk..kvkaeek.ewyfFskrdkkyatgkrk...nratksg 81 
                             G++  F+Ptd++l+ ++L   ++ +      ++ ++d++   ePw++    +v  +++  +yfF+++ kk  ++ r     r + sg
  RcHm_v2.0_Chr1g0350911 203 GMKilFRPTDSQLIRYFLGFDIAPDF-----IVYDCDLFGQeEPWEIWDrySVVFNNSdLLYFFTSSMKKLGSKGRVcnfGRRVGSG 284
                             55444************998887654.....467899886549****63233323444166*******99997776511156688** PP

                     NAM  82 yWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyr 127
                             +W+++   k v++       +++ +g k+ L + +  + + ++ +W ++ey+
  RcHm_v2.0_Chr1g0350911 285 TWNQKEAAKLVYDDegeadqERKPIGRKRKLRYVN--QGSVHHGEWYLEEYT 334
                             ************996666555555*********94..4455589*******7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    
MSISSSSYSG GFLTSEPSNS MVASSSSSGS VMPTLPLGMK MSFIPTDSLL VRFILHDSAP  60
NFIITDCDLF GQEEPWEIWD RYLGFLNQYN PDELYFFMPS LKKLSPNGGS RINRTIGGGS  120
WTQKEPIKFV CDDEDEGRSI GVKRKLRYHN QGSDQHVQWC LDEYTSVEVA NSCAIFRLRK  180
NERQYKSLCG ICVEDFIQPL PLGMKILFRP TDSQLIRYFL GFDIAPDFIV YDCDLFGQEE  240
PWEIWDRYSV VFNNSDLLYF FTSSMKKLGS KGRVCNFGRR VGSGTWNQKE AAKLVYDDEG  300
EADQERKPIG RKRKLRYVNQ GSVHHGEWYL EEYTSLVDEG AILLLRKNER YKAPAASMSS  360
GIPSEKKRKH GEIDRLEEKK PRKKKASRQS QTTTSPTMPI QQREPGNGDD NFVFFKGIDI  420
GTWEFPSLDD FVMACPPPLA ECDQEALATL EFPSLDEFVM AYPPPLKDCD QEELATLEFP  480
SPEDLASPSP PLDDCDQQVI AAVNIDDNHD LTGSCNDDDI ATWSFPIVDY SLTSLLQGKC  540
DEQALALVNS DDYLHFVKED TGAWCPAFVD DFLMALLVDC DEQA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1366385KKRKHGEIDRLEEKKPRKKK
2367386KKRKHGEIDRLEEKKPRKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.22e-09NAC family protein