PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0348921

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 416aa MW: 47291.9 Da PI: 5.6039

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0348921	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	271	293	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H RcHm_v2.0_Chr1g0348921 271 YKCETCKKVFKSYQALGGHRASH 293 9************9999998887 PP
2	zf-C2H2	11.7	0.00078	334	356	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H RcHm_v2.0_Chr1g0348921 334 HQCPVCFRVFSSGQALGGHKRSH 356 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MEKHKCKLCM RSFSNGRALG GHMRSHMMNL PIHQNPEGGE EEEEEEAPHD QMLIDEIDSV 60 SASSSDDDDD EEEEQGEGEE EEEEDEEGLY YGLRENPKRS IRLVDHEFSF AVDAGSVVLQ 120 DRESETESSK NPTRRRSKRT RKSAMFDHHH HHDDHQQHQH QLHNQYHQHD PKLNQHHLEA 180 FKKIKLKNKI DSCANNVEPE PVSSISDATT EEDVAFCLMM LSRDKWKKQD KQQDDQDEDA 240 EVELYRSLDD SDESEEQLIK FQRTKSSRGK YKCETCKKVF KSYQALGGHR ASHKKIKAAA 300 AAAANPNPNR IVYEPEPDPK INHNAGSSSF AKTHQCPVCF RVFSSGQALG GHKRSHVTGS 360 AAINNTHHYT PPVKSLAKIG DNMIDLNLPA PVDDDEMSQI EISAVSDAEF VNPIRR

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MEKHKCKLCM RSFSNGRALG GHMRSHMMNL PIHQNPEGGE EEEEEEAPHD QMLIDEIDSV  60
SASSSDDDDD EEEEQGEGEE EEEEDEEGLY YGLRENPKRS IRLVDHEFSF AVDAGSVVLQ  120
DRESETESSK NPTRRRSKRT RKSAMFDHHH HHDDHQQHQH QLHNQYHQHD PKLNQHHLEA  180
FKKIKLKNKI DSCANNVEPE PVSSISDATT EEDVAFCLMM LSRDKWKKQD KQQDDQDEDA  240
EVELYRSLDD SDESEEQLIK FQRTKSSRGK YKCETCKKVF KSYQALGGHR ASHKKIKAAA  300
AAAANPNPNR IVYEPEPDPK INHNAGSSSF AKTHQCPVCF RVFSSGQALG GHKRSHVTGS  360
AAINNTHHYT PPVKSLAKIG DNMIDLNLPA PVDDDEMSQI EISAVSDAEF VNPIRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	3e-40	C2H2 family protein