PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0346421
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 277aa    MW: 30179.6 Da    PI: 4.7955
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0346421genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-1890139255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              ++GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  RcHm_v2.0_Chr1g0346421  90 TFRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAARAIKG 139
                             59****998.**********843...6***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MAKKINIESD AQANLHTSSS SSSSSSSSSS TLTTHDSLID KSTENDQNSD KVSSSKGQEL  60
NNGSNEPNTK KRLRQRSSNT DHGDGGRHPT FRGVRMRSWG KWVSEIREPR KKSRIWLGTY  120
PTAEMAARAH DVAARAIKGA SAYLNFPELA QTLPQPASAS PKDIQAAAAK AASAFEEVKK  180
CEAETEEEEE EEEATLPSKD EQTTTTANTS ISTSNSTACS SSSTSNDYDD KLFDLPDLFM  240
DGTNGSDQFC FSSSSSSWHL CAADTGFRLE ESFLWEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-30ERF family protein