PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0321251

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 135aa MW: 15834.5 Da PI: 10.7744

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0321251	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	50.2	4.3e-16	30	91	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+ +t++q+++L+elF++ r p+ e+++++ + +++ ++V++WF N+Ra+ek+ RcHm_v2.0_Chr1g0321251 30 STRWIPTTDQIRILKELFYNkgVRSPTIEHIQRICLQQkwysKIEGKNVFYWFTNQRAREKQ 91 58***************7779*******999999******************97 PP
2	Wus_type_Homeobox	86.9	2.1e-28	29	93	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRW Pt++Qi+iL+el++ +G+r+P+ e+iqri + + y kie+kNVfyWF N++aRe+qk+ RcHm_v2.0_Chr1g0321251 29 SSTRWIPTTDQIRILKELFYnKGVRSPTIEHIQRICLQQKWYSKIEGKNVFYWFTNQRAREKQKK 93 689************98769***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence
MEPQNRQPTE DEGSNKAAGS SANMLCKKSS TRWIPTTDQI RILKELFYNK GVRSPTIEHI 60 QRICLQQKWY SKIEGKNVFY WFTNQRAREK QKKRSTSDVH VPMQRSGLFV MIMLPIRNMR 120 ISILTSDLLH LLLLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	8e-29	WOX family protein