PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW20454.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

M-type_MADS

Protein Properties

Length: 433aa MW: 48558.5 Da PI: 9.0176

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW20454.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	47.6	2.1e-15	49	90	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+s r t+ kRr+g+lKK +ELS+LC+++++ ++++++ RWW20454.1 49 IVNDSTRRATLKKRRKGLLKKVQELSILCGVDACAVVYAQNE 90 7799**********************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MDSDHSSASV CSHPFVLSFH LYKDRRRKEH RCVPVLLAMA RSKVRLSWIV NDSTRRATLK 60 KRRKGLLKKV QELSILCGVD ACAVVYAQNE HQPQMWPSPP ETARIMTRFK NSSQIERTRK 120 MIDQDSFLHQ RVVKLMEQLR RLQSENKEIR ITKLLCEGLL GRDFDDLSID DASALTWMAE 180 AKLRMVYEKR EEDSKRQAMP PPQSQAAAPL AATATGTQQT PPAPPPPTGW SNPVNHGQQA 240 VEAVQQPNWF TDVIVNWSQQ DSDNLLVDPN PTWSATLNLW CLLHYRAPKL QFTHEERLKD 300 SESSASAMFS GVGLVEDGPH HLDVMVGAGH HLAVKSHSVA IMCFCNQVGV AFVRPCHRAM 360 RARKQGDKAG EQAHFTWLGI LLSGWIDEGA RLPEGGGDGA NPRTHGRSLR SLFARSETNW 420 GMLNLTSLCS GII

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MDSDHSSASV CSHPFVLSFH LYKDRRRKEH RCVPVLLAMA RSKVRLSWIV NDSTRRATLK  60
KRRKGLLKKV QELSILCGVD ACAVVYAQNE HQPQMWPSPP ETARIMTRFK NSSQIERTRK  120
MIDQDSFLHQ RVVKLMEQLR RLQSENKEIR ITKLLCEGLL GRDFDDLSID DASALTWMAE  180
AKLRMVYEKR EEDSKRQAMP PPQSQAAAPL AATATGTQQT PPAPPPPTGW SNPVNHGQQA  240
VEAVQQPNWF TDVIVNWSQQ DSDNLLVDPN PTWSATLNLW CLLHYRAPKL QFTHEERLKD  300
SESSASAMFS GVGLVEDGPH HLDVMVGAGH HLAVKSHSVA IMCFCNQVGV AFVRPCHRAM  360
RARKQGDKAG EQAHFTWLGI LLSGWIDEGA RLPEGGGDGA NPRTHGRSLR SLFARSETNW  420
GMLNLTSLCS GII

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	64	RRRKEHRCVPVLLAMARSKVRLSWIVNDSTRRATLKKRRK
2	60	64	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	6e-27	M-type_MADS family protein