PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV98706.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

SRS

Protein Properties

Length: 564aa MW: 58666.3 Da PI: 9.5767

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV98706.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	194.4	3.9e-60	355	508	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 g a+CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpa++rr+rq+++ aa +++++sk++r +++++++s+t +s+ +++ + ++ RWV98706.1 355 GVATCQDCGNQAKKDCSHHRCRTCCKSRGFECSTHVKSTWVPATRRRDRQRTALAAG------SSASTSKKPRLV-ASQSATASHTFISNDNPPGSCDA 446 5689*******************************************87766653......345667777765.66667777888888888888888 PP DUF702 103 ss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +s lP +v+++avfrcvrv+s+ddge+++aY+++v+igG vfkG+Ly qG+++ RWV98706.1 447 TSghqdasirerLPGQVRAQAVFRCVRVTSIDDGEDQYAYHAVVKIGGRVFKGLLYGQGVHD 508 878888888899*********************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence
HFAVCSSDPS PSFLPLLSLF PPTRYEAPIP ALDGDQRQKK PFKNGRREKG GTARERTEAQ 60 LVSLQKRTEV EGRKQPKIMA GTSFKRGDED HARCSRRRSG SETVHARFTE GGCGVQRRGR 120 TAFASPSSSG PPPPPPPMIS SLSLLRVWQT RRYQGAGGVA SGRRFLSDTG AFADWVASSA 180 ATGRGDDLCL GFGAGGGGGA GGGTGAAGVV WAGSSSSSAA PAAGGRQASG YGVPADMGMV 240 LLASAASFNQ QHHHASLLSS SAADQHPIIP LLAAAPCLVD DENVARSKHG GIQLWQSALP 300 QPPHHHNYLP PTHGANPNPN LNPNPTLSNY LGKSMLTMLD AGGILTGVGA AVGGGVATCQ 360 DCGNQAKKDC SHHRCRTCCK SRGFECSTHV KSTWVPATRR RDRQRTALAA GSSASTSKKP 420 RLVASQSATA SHTFISNDNP PGSCDATSGH QDASIRERLP GQVRAQAVFR CVRVTSIDDG 480 EDQYAYHAVV KIGGRVFKGL LYGQGVHDGG DHGDEAKDRI PDISELHLGS HNGGGSSSSP 540 LLQSGVFGGS AGLIGGANYG NQIS

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence

HFAVCSSDPS PSFLPLLSLF PPTRYEAPIP ALDGDQRQKK PFKNGRREKG GTARERTEAQ  60
LVSLQKRTEV EGRKQPKIMA GTSFKRGDED HARCSRRRSG SETVHARFTE GGCGVQRRGR  120
TAFASPSSSG PPPPPPPMIS SLSLLRVWQT RRYQGAGGVA SGRRFLSDTG AFADWVASSA  180
ATGRGDDLCL GFGAGGGGGA GGGTGAAGVV WAGSSSSSAA PAAGGRQASG YGVPADMGMV  240
LLASAASFNQ QHHHASLLSS SAADQHPIIP LLAAAPCLVD DENVARSKHG GIQLWQSALP  300
QPPHHHNYLP PTHGANPNPN LNPNPTLSNY LGKSMLTMLD AGGILTGVGA AVGGGVATCQ  360
DCGNQAKKDC SHHRCRTCCK SRGFECSTHV KSTWVPATRR RDRQRTALAA GSSASTSKKP  420
RLVASQSATA SHTFISNDNP PGSCDATSGH QDASIRERLP GQVRAQAVFR CVRVTSIDDG  480
EDQYAYHAVV KIGGRVFKGL LYGQGVHDGG DHGDEAKDRI PDISELHLGS HNGGGSSSSP  540
LLQSGVFGGS AGLIGGANYG NQIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	2e-50	SRS family protein