PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV84987.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

Trihelix

Protein Properties

Length: 666aa MW: 72888.4 Da PI: 10.3762

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV84987.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.1	5.5e-14	54	104	35	87
trihelix 35 skkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +k++e g++rs+ +Ckek+en++k+yk++keg+ +r++++s +++f+qlea RWV84987.1 54 DRKLAELGYKRSARKCKEKFENVHKYYKRTKEGQAGRHEGKS--YRFFSQLEA 104 57899*****************************977777..*****85 PP
2	trihelix	103.7	1.4e-32	414	499	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++ ev+aLi++r+++e++++++ k++lWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr + + +tcpyf+ql+a RWV84987.1 414 RWPRAEVHALINLRTRLESKYQEAGPKGTLWEEISAGMQRLGYKRSAKRCKEKWENINKYFKKVKENNKKR-AVDAKTCPYFHQLDA 499 8*******************************************************************8.67778******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence
MRVCCERKRN AIITISFFLL SLAFCRCHCF IRRCFLFYPL SAAAIPYSCC YVVDRKLAEL 60 GYKRSARKCK EKFENVHKYY KRTKEGQAGR HEGKSYRFFS QLEALYSGSI SGGGGATTSA 120 GFTSPASSVV AISPPFGAGM VGPPVSRSQP ISAVAPPTMA MPTRVVVPDL TVPGGPQGIS 180 SFGAAAAAGI MFSSSSFSSS SSSESDDEET EAAGENQEGR KRKHGRGSGT SRKMMTFFDR 240 LMKQVMEQQD VMQQRILEAI EKREQDRTIR EEAWQRQKMG RVNREQELLV QERALAASRD 300 NAIISYLQKI CPQTISIPTM PSNAPLPGQQ PFYSPPAPPA ATQQQSQPPT APQQQQQRPP 360 ALSRPPQQQH EVRQHHQTSE VLRHQSSSAS EIVPSLEPQE AVGGGRLKPV SSSRWPRAEV 420 HALINLRTRL ESKYQEAGPK GTLWEEISAG MQRLGYKRSA KRCKEKWENI NKYFKKVKEN 480 NKKRAVDAKT CPYFHQLDAL YHKKLLGSGM AGVGNSSGTG NTVGIQRQQG RETDRASNQQ 540 QSDAATILTR QQAPPPPSPK QLTAEAESKN ENGTSNQNSG YSESGGDSVG ITTNGGLPPS 600 LFDEGMKKCA YRLTALTTLP TAQADAGSVE HRGRACHRRR PRMPAVAQAV TARGGGGNRG 660 GKGKRS

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence

MRVCCERKRN AIITISFFLL SLAFCRCHCF IRRCFLFYPL SAAAIPYSCC YVVDRKLAEL  60
GYKRSARKCK EKFENVHKYY KRTKEGQAGR HEGKSYRFFS QLEALYSGSI SGGGGATTSA  120
GFTSPASSVV AISPPFGAGM VGPPVSRSQP ISAVAPPTMA MPTRVVVPDL TVPGGPQGIS  180
SFGAAAAAGI MFSSSSFSSS SSSESDDEET EAAGENQEGR KRKHGRGSGT SRKMMTFFDR  240
LMKQVMEQQD VMQQRILEAI EKREQDRTIR EEAWQRQKMG RVNREQELLV QERALAASRD  300
NAIISYLQKI CPQTISIPTM PSNAPLPGQQ PFYSPPAPPA ATQQQSQPPT APQQQQQRPP  360
ALSRPPQQQH EVRQHHQTSE VLRHQSSSAS EIVPSLEPQE AVGGGRLKPV SSSRWPRAEV  420
HALINLRTRL ESKYQEAGPK GTLWEEISAG MQRLGYKRSA KRCKEKWENI NKYFKKVKEN  480
NKKRAVDAKT CPYFHQLDAL YHKKLLGSGM AGVGNSSGTG NTVGIQRQQG RETDRASNQQ  540
QSDAATILTR QQAPPPPSPK QLTAEAESKN ENGTSNQNSG YSESGGDSVG ITTNGGLPPS  600
LFDEGMKKCA YRLTALTTLP TAQADAGSVE HRGRACHRRR PRMPAVAQAV TARGGGGNRG  660
GKGKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	6e-36	Trihelix family protein