PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR96955.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 1295aa MW: 143334 Da PI: 8.3995

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR96955.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00063	1263	1289	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H RWR96955.1 1263 YVCReaGCGQTFRFVSDFSRHKRKtgH 1289 99********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1295 aa Download sequence
MAAISSSATD QSPEILSWLK SLPLAPEYHP SLEEFKEPIS YILKIEKEAS RFGICKIVPP 60 LPAPLKKTAI TNLNRSLAAR NPEKQATFTT RQQQIGFCPR RQRPVQRPVW KSGESYNLQQ 120 FEAKAKQFEK THLKKNAKRG LSALEIESLF WKATVDKPFT VEYANDMPGS AFGEAGEATG 180 AAVTVGETAW NMRGAARAKG SLLRFMKEEI AGVTSPMVYV GMMFSWFAWH VEDHDLHSLN 240 YLHMGAAKTW YGVPRDAAVA FEEVVRVQGY GGEVNPVVTF ATLGEKTTVM SPEVLIGAGI 300 PCCRLVQNAG DFVVTFPRAY HSGFSHGYNC GEAANIATPE WLRVAKEAAI RRASINYPPM 360 VSHFQLLYAF ALTMFSRNVR PMSLLFLKYD IGFSFRVPLS ISDKPRSSRL KDKKRGEGEI 420 IIKELFVQNV IENNDLLNIL LEKGSSCVLL PLDSSGISFC SNSRLGSQIM LKAKPSLGLW 480 SQQEAMEASG SLLCEDAVLD RNMGFMHSNG LCQGKKISSV KYGQCASDYL YASTDSCHSE 540 SEKEGTSKVN GLLDKGLFPC VTCGILSFAC VAVIQPREAA ARYLMSADCN FFGDQSIGLG 600 VTSDQPHDVD YITENSNLDA FSGRMEKDGN GGLYDIFVQA ADYPLQAPDQ MLVPASNTIA 660 QSISSLDLLA NAYGDSSDSE EEAVGHPKMS VSSNKNDLAG LPLACYEDTE VLSLGGDCQT 720 GAVGVLCHPL SVPTMAEEAP TGISSVNDKC PQTPDCSPGT SLENAVSVRP LGLASTSRKP 780 MVTSGRMITS QVTNSGKVGH KESDGSSRTC ISNSAATGNF NGTTQFGDID GSLKNGNKSI 840 IQRSDKDSSR MHIFCLEHAV EVEKQLRSIG GVHMLLLCHP DYPKLEAHAK SLAKELENNY 900 HWKDVYFREA TNEDRETIRS ALDDEEGIVG NGDWAVKMGI NLYHSANLSK SPLYSKQMPY 960 NPVLYKAFGR SLMNSPTNPN ALSRRSGRQK KIVVAGRWCG KVWMSNQVHP YLANRECPEQ 1020 EPVGGLHHIQ DPDQKLEMET EIRQDEILML PEGNLLPIAT KPGKKRKRPI ENVDSKKPNY 1080 PDIENTLEVA EGSPGNPSSF SRMILRSRMK HDDMGCNDSH FQDENEGERG TRRRRPSKLK 1140 DVEAKLKEVQ LKPAGERRAR KKKAKKAPSN NEVTVKDVEY HCDVEGCTMG FRTKQELTLH 1200 KRNICSVKGC EKKLFSHKYL VQHHRVHIDD RPLKCTWKGC KKAFKWAWAR TEHLRVHTGA 1260 RPYVCREAGC GQTFRFVSDF SRHKRKTGHS VKSKT

Sequence ? help Back to Top

Protein Sequence Length: 1295 aa Download sequence

MAAISSSATD QSPEILSWLK SLPLAPEYHP SLEEFKEPIS YILKIEKEAS RFGICKIVPP  60
LPAPLKKTAI TNLNRSLAAR NPEKQATFTT RQQQIGFCPR RQRPVQRPVW KSGESYNLQQ  120
FEAKAKQFEK THLKKNAKRG LSALEIESLF WKATVDKPFT VEYANDMPGS AFGEAGEATG  180
AAVTVGETAW NMRGAARAKG SLLRFMKEEI AGVTSPMVYV GMMFSWFAWH VEDHDLHSLN  240
YLHMGAAKTW YGVPRDAAVA FEEVVRVQGY GGEVNPVVTF ATLGEKTTVM SPEVLIGAGI  300
PCCRLVQNAG DFVVTFPRAY HSGFSHGYNC GEAANIATPE WLRVAKEAAI RRASINYPPM  360
VSHFQLLYAF ALTMFSRNVR PMSLLFLKYD IGFSFRVPLS ISDKPRSSRL KDKKRGEGEI  420
IIKELFVQNV IENNDLLNIL LEKGSSCVLL PLDSSGISFC SNSRLGSQIM LKAKPSLGLW  480
SQQEAMEASG SLLCEDAVLD RNMGFMHSNG LCQGKKISSV KYGQCASDYL YASTDSCHSE  540
SEKEGTSKVN GLLDKGLFPC VTCGILSFAC VAVIQPREAA ARYLMSADCN FFGDQSIGLG  600
VTSDQPHDVD YITENSNLDA FSGRMEKDGN GGLYDIFVQA ADYPLQAPDQ MLVPASNTIA  660
QSISSLDLLA NAYGDSSDSE EEAVGHPKMS VSSNKNDLAG LPLACYEDTE VLSLGGDCQT  720
GAVGVLCHPL SVPTMAEEAP TGISSVNDKC PQTPDCSPGT SLENAVSVRP LGLASTSRKP  780
MVTSGRMITS QVTNSGKVGH KESDGSSRTC ISNSAATGNF NGTTQFGDID GSLKNGNKSI  840
IQRSDKDSSR MHIFCLEHAV EVEKQLRSIG GVHMLLLCHP DYPKLEAHAK SLAKELENNY  900
HWKDVYFREA TNEDRETIRS ALDDEEGIVG NGDWAVKMGI NLYHSANLSK SPLYSKQMPY  960
NPVLYKAFGR SLMNSPTNPN ALSRRSGRQK KIVVAGRWCG KVWMSNQVHP YLANRECPEQ  1020
EPVGGLHHIQ DPDQKLEMET EIRQDEILML PEGNLLPIAT KPGKKRKRPI ENVDSKKPNY  1080
PDIENTLEVA EGSPGNPSSF SRMILRSRMK HDDMGCNDSH FQDENEGERG TRRRRPSKLK  1140
DVEAKLKEVQ LKPAGERRAR KKKAKKAPSN NEVTVKDVEY HCDVEGCTMG FRTKQELTLH  1200
KRNICSVKGC EKKLFSHKYL VQHHRVHIDD RPLKCTWKGC KKAFKWAWAR TEHLRVHTGA  1260
RPYVCREAGC GQTFRFVSDF SRHKRKTGHS VKSKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1132	1166	RRRRPSKLKDVEAKLKEVQLKPAGERRARKKKAKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein