PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR96657.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

ARF

Protein Properties

Length: 688aa MW: 75620.5 Da PI: 7.5297

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR96657.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.4	2.8e-23	122	223	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +a+++ ++++ + + +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +++++el RWR96657.1 122 FSKTLTQSDANNGGGFSVPRYCADTIfppldmnKNPPVQ--NIFAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL--RTEKGEL 216 88*******************999975444444..7********************************************..559 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ RWR96657.1 217 CVGIRRA 223 ***97 PP
2	Auxin_resp	109.4	3.7e-36	299	382	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++ +FevvY+Prast+eF+vk++ v +a++++++ GmRfkm fe +ds ++++ +Gt+++v+ +dpvrWpnS+Wr+L+ RWR96657.1 299 AATLAANGLAFEVVYYPRASTPEFCVKAQTVTAAMRIQWCSGMRFKMPFEADDSLRTSYfMGTISSVQVADPVRWPNSPWRVLQ 382 688999***************************************************9********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence
METALGRSSK ESMESEKCLD SELWHACAGA MVQMPVVNSK VYYFPQGHAE HARGNVDFGN 60 YRWIPATILC RVADVKFLAD HESDEVYVKI RLVPVRNGES EFSVEESNGV VFGESQGKPA 120 SFSKTLTQSD ANNGGGFSVP RYCADTIFPP LDMNKNPPVQ NIFAKDVHGE IWKFRHIYRG 180 TPRRHLLTTG WSTFVNQKKL IAGDSIVFLR TEKGELCVGI RRAKRGGLGG LGGGPESPTS 240 ALNPASCFSQ LGIGFSVLLK EEERARNANS DLNSNGGGGG GGGGFRGRWR VKPESVIQAA 300 TLAANGLAFE VVYYPRASTP EFCVKAQTVT AAMRIQWCSG MRFKMPFEAD DSLRTSYFMG 360 TISSVQVADP VRWPNSPWRV LQVTWDEPEL LQSVKRISPW LIELVSNMPT VHLSPFSPPR 420 KKSRLPQLPD FPLDSQFPMP TFSGNPLGLS SPTCHLSDNT PAGIQGTRHP PLFHMFLPTG 480 FQGLDHTAPS SRISTGLTRT PTIPDNASCL LTIGNSPQHR RKLDNGNTPR LVLFGQPIFT 540 EQQMSSSCSG DTVSPVLTGS SSSVENPDKV ANFTSDGLPE NSSYEGFPWY KDRQPCELSL 600 EAGHCKVFMD SENVGRTLDL SVLGSYEELY RRLANMFGIE KSEMLSHVLY RDANGAVKHT 660 GDEPFSDFMR TARKLTILMD VGSDSIGR

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence

METALGRSSK ESMESEKCLD SELWHACAGA MVQMPVVNSK VYYFPQGHAE HARGNVDFGN  60
YRWIPATILC RVADVKFLAD HESDEVYVKI RLVPVRNGES EFSVEESNGV VFGESQGKPA  120
SFSKTLTQSD ANNGGGFSVP RYCADTIFPP LDMNKNPPVQ NIFAKDVHGE IWKFRHIYRG  180
TPRRHLLTTG WSTFVNQKKL IAGDSIVFLR TEKGELCVGI RRAKRGGLGG LGGGPESPTS  240
ALNPASCFSQ LGIGFSVLLK EEERARNANS DLNSNGGGGG GGGGFRGRWR VKPESVIQAA  300
TLAANGLAFE VVYYPRASTP EFCVKAQTVT AAMRIQWCSG MRFKMPFEAD DSLRTSYFMG  360
TISSVQVADP VRWPNSPWRV LQVTWDEPEL LQSVKRISPW LIELVSNMPT VHLSPFSPPR  420
KKSRLPQLPD FPLDSQFPMP TFSGNPLGLS SPTCHLSDNT PAGIQGTRHP PLFHMFLPTG  480
FQGLDHTAPS SRISTGLTRT PTIPDNASCL LTIGNSPQHR RKLDNGNTPR LVLFGQPIFT  540
EQQMSSSCSG DTVSPVLTGS SSSVENPDKV ANFTSDGLPE NSSYEGFPWY KDRQPCELSL  600
EAGHCKVFMD SENVGRTLDL SVLGSYEELY RRLANMFGIE KSEMLSHVLY RDANGAVKHT  660
GDEPFSDFMR TARKLTILMD VGSDSIGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein