PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR96432.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

ARF

Protein Properties

Length: 701aa MW: 78394.7 Da PI: 6.6781

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR96432.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.2	1.3e-22	116	216	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++ +++a+e+ ++++ +++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L++gD +vF + +++el+v RWR96432.1 116 FCKILTASDTSTHGGFSVLRRHATEClppldMSQPIPTQELAAKDLHGFQWRFKHIFRGQPRRHLLTTGWSTFVASKRLNAGDAFVFLR--GDNEELRV 212 99**************************9555555669**********************************************3..36777899 PP EEE- CS B3 95 kvfr 98 +v r RWR96432.1 213 GVKR 216 9977 PP
2	Auxin_resp	103.9	1.9e-34	242	321	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t++ F+v+Y+Pr+ s+F+v ++k+++a+++ +svGmRfkm+fe+eds+err++Gt++gv d++p +W++SkWrsLk RWR96432.1 242 ASHAVLTNTLFTVYYKPRT--SQFIVGLNKYLEAVNNGLSVGMRFKMKFEGEDSPERRFTGTIIGVGDVSP-QWKDSKWRSLK 321 68999***********6..9*********************************************.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MDSGRGAVDL LYEELWRACA GPLVDVPKEG ERVFYFPQGH MEQLEASMNQ EIDKKINMFN 60 LPSKILCHVI NCQLRAEPDT DEVYAQITLQ PDPVQEEPRS PDPNKPESPA PAVRSFCKIL 120 TASDTSTHGG FSVLRRHATE CLPPLDMSQP IPTQELAAKD LHGFQWRFKH IFRGQPRRHL 180 LTTGWSTFVA SKRLNAGDAF VFLRGDNEEL RVGVKRTAPQ QNTIPQSVIS SQSMHLGVLA 240 TASHAVLTNT LFTVYYKPRT SQFIVGLNKY LEAVNNGLSV GMRFKMKFEG EDSPERRFTG 300 TIIGVGDVSP QWKDSKWRSL KVQWDEAAGF QRPEKVSPWE IEPFNSNTST NPSQLSEIKN 360 KRPKPSIEFP ILGIESRSAF WSPGATQSCD FSGLSGNEVS SCDTQFVWPS KVNDMKSITN 420 HSSLQNAMRP EETWLKELRS PFINQPKSLP SFHGNVSLNL FQDLNEGGKT ISVSSAPSGY 480 SSSDHVLKTS NSSTPLLLEK GKRSETHNGY RLFGIELVGN PNNTSCGEKT LVGPVSLSSA 540 TIEEPALAAI SEANSDQQLG LSKPLKEENH NVQVNSMEPT DRQSCSTRSR TKVHMQGFAV 600 GRAVDLTLLE GYDALITELE RMFEIKGELR QRKKWEIIFT DDEGDMMLVG DDPWMEFCKM 660 VKKIFIYTCE EVKKMNPRNK LPSPRTRDEA ASMGSELKSE A

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MDSGRGAVDL LYEELWRACA GPLVDVPKEG ERVFYFPQGH MEQLEASMNQ EIDKKINMFN  60
LPSKILCHVI NCQLRAEPDT DEVYAQITLQ PDPVQEEPRS PDPNKPESPA PAVRSFCKIL  120
TASDTSTHGG FSVLRRHATE CLPPLDMSQP IPTQELAAKD LHGFQWRFKH IFRGQPRRHL  180
LTTGWSTFVA SKRLNAGDAF VFLRGDNEEL RVGVKRTAPQ QNTIPQSVIS SQSMHLGVLA  240
TASHAVLTNT LFTVYYKPRT SQFIVGLNKY LEAVNNGLSV GMRFKMKFEG EDSPERRFTG  300
TIIGVGDVSP QWKDSKWRSL KVQWDEAAGF QRPEKVSPWE IEPFNSNTST NPSQLSEIKN  360
KRPKPSIEFP ILGIESRSAF WSPGATQSCD FSGLSGNEVS SCDTQFVWPS KVNDMKSITN  420
HSSLQNAMRP EETWLKELRS PFINQPKSLP SFHGNVSLNL FQDLNEGGKT ISVSSAPSGY  480
SSSDHVLKTS NSSTPLLLEK GKRSETHNGY RLFGIELVGN PNNTSCGEKT LVGPVSLSSA  540
TIEEPALAAI SEANSDQQLG LSKPLKEENH NVQVNSMEPT DRQSCSTRSR TKVHMQGFAV  600
GRAVDLTLLE GYDALITELE RMFEIKGELR QRKKWEIIFT DDEGDMMLVG DDPWMEFCKM  660
VKKIFIYTCE EVKKMNPRNK LPSPRTRDEA ASMGSELKSE A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.2	0.0	ARF family protein