PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR96420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | LBD | ||||||||
Protein Properties | Length: 188aa MW: 21295.9 Da PI: 6.1023 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.6 | 2.9e-40 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaC++lrr+C+++C lapyfp +++ +fa vhk+FGasnv+k+l+a++e++reda++s+vyeA+ar+rdP+yG++gvi+ lq++l+ l+ +l+++k+ RWR96420.1 14 PCAACRLLRRRCSSSCLLAPYFPIDDTDSFAQVHKVFGASNVIKMLQAVDESRREDAVKSMVYEAKARLRDPIYGCAGVIFCLQKHLKDLEIQLQSTKA 112 7*********************************************************************************************99987 PP DUF260 100 e 100 + RWR96420.1 113 Q 113 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence |
MDLSMQARTR SNQPCAACRL LRRRCSSSCL LAPYFPIDDT DSFAQVHKVF GASNVIKMLQ 60 AVDESRREDA VKSMVYEAKA RLRDPIYGCA GVIFCLQKHL KDLEIQLQST KAQFLESQAQ 120 RDQLLKVLAE SNHFDPFAQF NNLISDRYNL VSDDNTLGCN PYEYSSDFSG SQEIQGLYDQ 180 HGQTSYST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 7e-33 | LBD family protein |