PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR95895.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 165aa MW: 18642.4 Da PI: 9.99 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.6 | 5.1e-21 | 11 | 57 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 e s rq+t+skR++g+ KKA ELSvLCd++va+++fs+ gk y RWR95895.1 11 LETASARQITYSKRKAGLAKKAMELSVLCDINVALVMFSPAGKPTSY 57 677899************************************96555 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence |
MGRMKIKIRR LETASARQIT YSKRKAGLAK KAMELSVLCD INVALVMFSP AGKPTSYIGG 60 NNYWTNPDEV ETYPETVVME ECLVESLNRL QKRKTQNCAW PPGQYFPRLN GRSQVDQKLV 120 MNLRDFSGHG NARGAAENVK TPFFNHARLL NSMGPSYEAH PENHI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 2e-21 | M-type_MADS family protein |