PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR95716.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 603aa    MW: 65985.2 Da    PI: 4.7751
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR95716.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3703.1e-1132346032374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  + LlecA+ vs++d  +a+++L rl+elas +gdp++R+a+yf+eAL  rl +++    + ++  ++     ++ + ++k++++++P+ kf+hltaNq
  RWR95716.1 234 LQSLLECAR-VSDSDPDRATKTLVRLRELASDRGDPTERVAFYFAEALYGRLCSKTAAGKSPVSFFSS----PEDFTLSYKALNDACPYSKFAHLTANQ 327
                 689*****9.8999****************************************55555555555555....58899999******************* PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAee.lgvpfefnvlvakrledleleeLr 195
                 aIlea+++++r+HiiDf+i qG+QW+aLlqaLa R++g+p ++Ri g+ +p+ g   + +l++tg+rL++fA++ lg++fef++ + + +++l+ +++r
  RWR95716.1 328 AILEATQSATRIHIIDFGIVQGVQWAALLQALAYRSGGKPeKIRISGIPAPALGnaPSASLSATGNRLREFAANvLGLDFEFEP-ILTPVHELSESSFR 425
                 ************************************87776*********99999999*************87538********.799*********** PP

        GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 v+p+E laVn++lql++++ es ++ +   +vL+l ksl+Pkvv++ e ea++n+  F++rf +al++ysa+f+sle +++r+s eri vEr llgr+i
  RWR95716.1 426 VDPDEFLAVNFMLQLYNIMGESSAVVE---QVLRLAKSLNPKVVTLGEYEASLNRVGFFDRFQNALRFYSAVFESLEPSMARDSCERIQVERLLLGRRI 521
                 *******************99998888...9******************************************************************** PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                   vv  eg errer+e++e+W++ +e +GF++++ls++a++qak ll +++ s  +++ e+   ++ l W+++pL++vS+Wr
  RWR95716.1 522 ACVVGPEGGERRERTEEKEQWKALMEGCGFESISLSHYAVSQAKILLWHYHySSMFSLVESPPGFLsLAWNGKPLLTVSSWR 603
                 ***************************************************9999*99998777777**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    
MKMAYMCADS GNLMAIAQQV IQQKQQQQQQ QQQQQTQQQQ ISAVNSFGLN PWAPHSQQTL  60
SDRFGFPFPD SFSVPGAPDS SPTHLFPHLD HAPAFRLSDL GAGSGAFDSD EWMESLIGES  120
ADNSDLPSGC DSSWPAAAAA AAHDLSSILP PEPTPPFPSD LIPAGPSDLN RIVFSDSDKN  180
PIPPPPIPPQ TWPIPTTPPP LPTEDPSPDS WKKDSGHSPV TSPESTDSLS SPLLQSLLEC  240
ARVSDSDPDR ATKTLVRLRE LASDRGDPTE RVAFYFAEAL YGRLCSKTAA GKSPVSFFSS  300
PEDFTLSYKA LNDACPYSKF AHLTANQAIL EATQSATRIH IIDFGIVQGV QWAALLQALA  360
YRSGGKPEKI RISGIPAPAL GNAPSASLSA TGNRLREFAA NVLGLDFEFE PILTPVHELS  420
ESSFRVDPDE FLAVNFMLQL YNIMGESSAV VEQVLRLAKS LNPKVVTLGE YEASLNRVGF  480
FDRFQNALRF YSAVFESLEP SMARDSCERI QVERLLLGRR IACVVGPEGG ERRERTEEKE  540
QWKALMEGCG FESISLSHYA VSQAKILLWH YHYSSMFSLV ESPPGFLSLA WNGKPLLTVS  600
SWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein