PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR95537.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

AP2

Protein Properties

Length: 472aa MW: 51272 Da PI: 6.7949

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR95537.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	5.9e-17	173	222	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g RWR95537.1 173 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 222 78*****************......55**********************997 PP
2	AP2	42.1	2.1e-13	265	315	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g RWR95537.1 265 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 315 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MMLDLNVVLD ATCVQGESGT VEKKLVGAPA GHVDDSGTSN SSVVNVEAWA EDDYSSTHSN 60 HRGGGGGSGF PGFGFDLLKR GGGGFRVEEG DGVDEEDIGV SLQLGFVTRQ LFPAESGGAV 120 SGFRTAPASV SSSSSSSSAV RHRANLSFGP PAEVKVSPPP VKKSRRGPRS KSSQYRGVTF 180 YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVEADINFN ISDYDEDMKQ 240 MRDLAKEEFV HILRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEI 300 EAARAYDKAA IKCNGREAVT NFEPSTYGEL ISEADEKGSA DNLDLNLGIS TPSFAHDLKG 360 NDGLGFHFHC SPLEMSRPQK PATDDHVAMG QCHFWTVASE RPPVWTGVYS GFFPNLEERM 420 IEKRVEVVPP TLSNPSWQMH HGSTTMPLFS SAASSGFSTT TSTSAAYPLP PF

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MMLDLNVVLD ATCVQGESGT VEKKLVGAPA GHVDDSGTSN SSVVNVEAWA EDDYSSTHSN  60
HRGGGGGSGF PGFGFDLLKR GGGGFRVEEG DGVDEEDIGV SLQLGFVTRQ LFPAESGGAV  120
SGFRTAPASV SSSSSSSSAV RHRANLSFGP PAEVKVSPPP VKKSRRGPRS KSSQYRGVTF  180
YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVEADINFN ISDYDEDMKQ  240
MRDLAKEEFV HILRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEI  300
EAARAYDKAA IKCNGREAVT NFEPSTYGEL ISEADEKGSA DNLDLNLGIS TPSFAHDLKG  360
NDGLGFHFHC SPLEMSRPQK PATDDHVAMG QCHFWTVASE RPPVWTGVYS GFFPNLEERM  420
IEKRVEVVPP TLSNPSWQMH HGSTTMPLFS SAASSGFSTT TSTSAAYPLP PF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-95	AP2 family protein