PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR94432.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 717aa MW: 77214.5 Da PI: 7.3925

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR94432.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.7	3.2e-16	457	503	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq RWR94432.1 457 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 503 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence
MPYSQLHQMT KGKLESTQPK MTNYSTDFSF EPEMNSVELL WENGQLVMQE QSSRARKSSL 60 MTSTFPSRST KVQDRDSGDA VIPNMGKRTG NLESIVNDLS SVPSVHVGSD RDDDMARWLN 120 YHIDDPLQND YYSEIFPELS GSLNPARNNA GPVDKSSSFG QVVRDSSEFS AKGNSNQHGN 180 TLKFVGGGSE PNRFRSSQYF PLLQQSRPLG ANQKSRVSDL VTNNNNSAAH QSHCGNWSQT 240 PISASEMLNR KMMPKKDSPS AKPPQPNSSM GLMNFSHFSR PAALVKANLQ NIGVAAAGTS 300 AVDRLRSSEK AVVTGSVPME PSVVESTSSL NSVGLSKVNL GSSSKPLLEP ASVGRSEEIC 360 HEDASRNSNS RSPDHVRCQG SSATASVALG RQEGEKAFVS MVASSSVCSG NSEPKHGIKR 420 KSHDAEESEF QSEDVEEESV DVKKTTKGSK RSRAAEVHNL SERRRRDRIN EKMRALQELI 480 PNCNKVDKAS MLDEAIEYLK TLQLQVQIMS MGSGLCMPPM MLPAGLQQMR TPHMAHFSPM 540 GTGMGMGMGY GMGMIDMSCS SGYPLIPVSS MHGARFPCSP VPGAAGVHGM PGTSLQMFGV 600 PGQGLPFGLP RAPYIPLSGF STGAVSSPDT LVAACSTPIP VSSLPSSSKG QMQDMNSQPM 660 NKISNDCSQI QTSTQVTEEC FEQCDLVQRN NQTLHVNEGP AAVNTGRKGI PSSGEGN

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence

MPYSQLHQMT KGKLESTQPK MTNYSTDFSF EPEMNSVELL WENGQLVMQE QSSRARKSSL  60
MTSTFPSRST KVQDRDSGDA VIPNMGKRTG NLESIVNDLS SVPSVHVGSD RDDDMARWLN  120
YHIDDPLQND YYSEIFPELS GSLNPARNNA GPVDKSSSFG QVVRDSSEFS AKGNSNQHGN  180
TLKFVGGGSE PNRFRSSQYF PLLQQSRPLG ANQKSRVSDL VTNNNNSAAH QSHCGNWSQT  240
PISASEMLNR KMMPKKDSPS AKPPQPNSSM GLMNFSHFSR PAALVKANLQ NIGVAAAGTS  300
AVDRLRSSEK AVVTGSVPME PSVVESTSSL NSVGLSKVNL GSSSKPLLEP ASVGRSEEIC  360
HEDASRNSNS RSPDHVRCQG SSATASVALG RQEGEKAFVS MVASSSVCSG NSEPKHGIKR  420
KSHDAEESEF QSEDVEEESV DVKKTTKGSK RSRAAEVHNL SERRRRDRIN EKMRALQELI  480
PNCNKVDKAS MLDEAIEYLK TLQLQVQIMS MGSGLCMPPM MLPAGLQQMR TPHMAHFSPM  540
GTGMGMGMGY GMGMIDMSCS SGYPLIPVSS MHGARFPCSP VPGAAGVHGM PGTSLQMFGV  600
PGQGLPFGLP RAPYIPLSGF STGAVSSPDT LVAACSTPIP VSSLPSSSKG QMQDMNSQPM  660
NKISNDCSQI QTSTQVTEEC FEQCDLVQRN NQTLHVNEGP AAVNTGRKGI PSSGEGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	419	423	KRKSH
2	462	467	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-47	bHLH family protein