PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR93576.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 412aa    MW: 46138.6 Da    PI: 4.8413
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR93576.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF382.2e-123877241
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                +ie+k +r vt+skR++g++KKA+ L    ++evavi f 
  RWR93576.1 38 KIEDKQKRFVTLSKRKEGLFKKAKKLALDFGVEVAVIGFT 77
                59***********************************876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    
MILSSEAALA RKHQLHSHFV RLYFHFNNMG KRKIEMIKIE DKQKRFVTLS KRKEGLFKKA  60
KKLALDFGVE VAVIGFTVGG RPFSFGSSSV DDIIDKYAQN QPLQFTKQER IHTVIHQEKS  120
NVKLINSEGS IGNELMDYAS ALTMLKDTPV QTIADISQKN NHEDDHSIDK DASFTYSGLG  180
GYNKSYYCNN APPLAEVQLK NENDINSLIT SSTGDKILVD SSCHVSPGCG TDLFSADDLI  240
CSHSINDPTF LPVLRDDELD DDCWNEIAST SISHHYTTAL QSNFTGETIQ GGGFPFINAD  300
HMADLWREKY VTDSYLEETM ADYETELCPV ENVTNLNLEK SKRFPTNLVT KGLPQMEASF  360
CYLSSLNNQQ AYGEMISTPS SSSLCAGNFE YSDWLLDGLE AELAFLTQRT PY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-13M-type_MADS family protein