PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR93572.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 397aa    MW: 44289.4 Da    PI: 5.416
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR93572.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.53.6e-133777141
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                k+ie+k +r vt+skR++g++KKA+ L    ++evavi f 
  RWR93572.1 37 KKIEDKQRRFVTLSKRKEGLFKKAKKLALDFGVEVAVIGFT 77
                68************************************775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    
MILSSEAALA RKHQVHSHFV RLYFHFNNMG KRKIEMKKIE DKQRRFVTLS KRKEGLFKKA  60
KKLALDFGVE VAVIGFTIGG RPFSFGSSSV DDIIDKYAQN HPLQFTEQEK IYTAIHQEKS  120
NVKLINSEGS IGNELMDYAS AVTMLKDTPV QTMAGISQKN NREDDHSIDK DASFTYSGLG  180
EYSKSYYCNN APPLAEVQLK NENDINSLIT SSTGDKILAD SSYHVSSGCG TNLFSADDLI  240
FSHSINDSTF LPVLRDRELD DDCSNEIAST SISHHDTTAL QGNFTGETIQ GGGFPFINAD  300
HMADLWLAKY VSDSYLEEIV ADYETELCPV KNVTNLHSEK SKRFQTNLVT KGVPLMEASF  360
CYSSSLNNQQ AYGEMISTPS SSSLRAGNFE YSDWLLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-13M-type_MADS family protein