PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR93478.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

CO-like

Protein Properties

Length: 415aa MW: 45551.5 Da PI: 4.6941

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR93478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.4	1.1e-06	3	43	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++ +++ +C++++ lC C ++H+ H+ RWR93478.1 3 PLCDFCGAQRAMVYCKSDNARLCFPCDGYIHSAnalsrrHE 43 68*****************************6566766776 PP
2	zf-B_box	23.4	1.2e-07	45	79	3	34
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedCllee...H 34 + C++++++++ + C ++++ lC++C ++ H RWR93478.1 45 ALLCDRCGSQPAVIRCSEDKVSLCQNCDWNGslgH 79 568************************97776666 PP
3	CCT	61.6	2.5e-21	359	402	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+ktR F K+irY+sRK +A++R+RvKGrFvk+ RWR93478.1 359 RDKAKMRYKEKKKTRTFGKQIRYASRKIRADTRKRVKGRFVKAG 402 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MDPLCDFCGA QRAMVYCKSD NARLCFPCDG YIHSANALSR RHERALLCDR CGSQPAVIRC 60 SEDKVSLCQN CDWNGSLGHQ QQTPNCYSGC PSLAELSGFL SCINDASLLN EVDGTWGSRI 120 MTASENCVNN CWEQGGNGGS IGLTAIDHRL NALDSGEKLE PWVSSSSTMP NENSLVYDGE 180 QQVGFQETNL FKAGCAPCND LQICHNDGLC EGFNMDDVGL NFEKNDELFD YSQSQSRYLY 240 ENVGMDEKNF SVVDSESPNE NITEASSLGQ HDCMTLQSSR AIGTIGATQA VTACLDQVLF 300 DPSSNRNINV GFPSGQLSVS NLTGESNAGD YQDCGVSPLF LSSESPWDSS LESSCPQARD 360 KAKMRYKEKK KTRTFGKQIR YASRKIRADT RKRVKGRFVK AGEAYDYDPL VARTC

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MDPLCDFCGA QRAMVYCKSD NARLCFPCDG YIHSANALSR RHERALLCDR CGSQPAVIRC  60
SEDKVSLCQN CDWNGSLGHQ QQTPNCYSGC PSLAELSGFL SCINDASLLN EVDGTWGSRI  120
MTASENCVNN CWEQGGNGGS IGLTAIDHRL NALDSGEKLE PWVSSSSTMP NENSLVYDGE  180
QQVGFQETNL FKAGCAPCND LQICHNDGLC EGFNMDDVGL NFEKNDELFD YSQSQSRYLY  240
ENVGMDEKNF SVVDSESPNE NITEASSLGQ HDCMTLQSSR AIGTIGATQA VTACLDQVLF  300
DPSSNRNINV GFPSGQLSVS NLTGESNAGD YQDCGVSPLF LSSESPWDSS LESSCPQARD  360
KAKMRYKEKK KTRTFGKQIR YASRKIRADT RKRVKGRFVK AGEAYDYDPL VARTC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	4e-78	CO-like family protein