PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR92899.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | C2H2 | ||||||||
Protein Properties | Length: 603aa MW: 64420.2 Da PI: 8.9257 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.1e-05 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H RWR92899.1 70 FICEVCNKGFQREQNLQLHRRGH 92 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00046 | 146 | 168 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ RWR92899.1 146 WKCDKCSKRYAVQSDWKAHSKTC 168 58*****************9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 603 aa Download sequence |
MAAASSSTVF FGIREEDQNQ IKQQQSSTPT SSTAPTTAPQ KKKRNLPGTP NPDAEVIALS 60 PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLRQ KTTKEVKKKV YLCPEPTCVH 120 HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL 180 FSRRDSFITH RAFCDALAQE SARLPTGLSN MGSHLYGSSN MGLALSQVGS QISSLQDQSH 240 PSSDLLRLRG AGGGAQFDHI LSSSNPSPFR QQSSSPFFLP ASNQDFHEEP QSHHGILQNK 300 PFQGLMHLPD LQDNSNTSSS AAAANLFNLS FFSNSSNISS MNNNSSNNNG HLSSSGLLIP 360 DQFTNGNAGG EASTLFSGNV MGDHIGSGVS LYNPSVQNDS VIPQMSATAL LQKAAQMGAT 420 TSGNSASLLR GFGSSSSKQD RSQISANFRG GFGGGGGGES MRSQLDNETQ LQDLMNSLTN 480 GNSSLFGGGS GVAAAQFGGS CAPEQETGFG GFNAGRTSLE QQNHSSHLSN LDEAKLHQNL 540 AASMGGSDRL TRDFLGVGGM VRGISGAMSQ RDQHHGSINF GSLDSEMKNA ASATRSFGGG 600 NLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-117 | C2H2 family protein |