PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR92894.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Trihelix

Protein Properties

Length: 318aa MW: 36012.2 Da PI: 8.6065

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR92894.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.3	8.2e-18	48	138	2	86
trihelix 2 WtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt +e+++Li+a++ ++er r+ ++ +W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ e + s+++ p + q+e RWR92894.1 48 WTVHETMVLITAKKMDDERRARSTtsetkqsykTAELRWKWVENYCWNQGCFRSQNQCNDKWDNLLRDYKKVRDYEAGAPSDDR---PSYWQME 138 ************888888876334455555599****************************************9754444...8888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MSDPPNTTSI VILDHHHHPL LISTAAAASS AATPSSSSLQ REYRKGNWTV HETMVLITAK 60 KMDDERRARS TTSETKQSYK TAELRWKWVE NYCWNQGCFR SQNQCNDKWD NLLRDYKKVR 120 DYEAGAPSDD RPSYWQMEKH ERKERNLPSN LLYDVFQALH DVVNRRFLQR SSAPDAPTPV 180 ISQPSAPRPP PPPPLPPPPP PPPPQPPLQS PLSAEISDSS ETEGEGSERV DSDTKRRKVR 240 NVGSSVVRSA SLLARTLLAC EEKKEKRHQD VLEMEERRLQ IAENRNEMNR QGIDGLVSAV 300 SNLSSAIHAL VSNRNDTR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	266	KRRKVRNVGSSVVRSASLLARTLLACEEKKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	7e-51	Trihelix family protein