PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR92728.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 439aa MW: 49061.3 Da PI: 5.9127

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR92728.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00045	87	107	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++Cp C k F++ +L H+r RWR92728.1 87 HTCPVCRKEFKSMKSLSGHMR 107 79******************8 PP
2	zf-C2H2	11.6	0.00083	287	309	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C C+ksF+++ L H+ H RWR92728.1 287 HICRTCNKSFNSHQALGGHMTGH 309 68**************9999877 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MVDGDNHSDH ANKAPISENT LIDHDTISED GLSYHREKKP CLNEEIDHHQ LKNQNVYTTD 60 SDEENACSVS DEHVKEDEVP HVAESGHTCP VCRKEFKSMK SLSGHMRCHP ERRWRGIQPP 120 PTLKNSPSSA ISESGGYKID DQNGSDTTME TSPSNQPPPF FKWPVKRSRY KEAKSLLENM 180 NEEEIQAAVN LFNLSRLDPV EWEQERRKHV VKGPDANSMG FELEKSQIQE QEKTSENGFK 240 SELAEIDDKK EIIQGPGKMD SSSKNQMQFP CKTKAEKKRK SVSSASHICR TCNKSFNSHQ 300 ALGGHMTGHK NDLMTAAKVD AISVACNTEE VRYGNSNAAE SKPLPETDAT CSKAEMVHQC 360 KTCNKTFPSG QALGGHQRCH WNGGVEASMN SVKLQEDENR VVRQIRNFDL NEPAMVEDED 420 DIALALGITK RLDSIESGS

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MVDGDNHSDH ANKAPISENT LIDHDTISED GLSYHREKKP CLNEEIDHHQ LKNQNVYTTD  60
SDEENACSVS DEHVKEDEVP HVAESGHTCP VCRKEFKSMK SLSGHMRCHP ERRWRGIQPP  120
PTLKNSPSSA ISESGGYKID DQNGSDTTME TSPSNQPPPF FKWPVKRSRY KEAKSLLENM  180
NEEEIQAAVN LFNLSRLDPV EWEQERRKHV VKGPDANSMG FELEKSQIQE QEKTSENGFK  240
SELAEIDDKK EIIQGPGKMD SSSKNQMQFP CKTKAEKKRK SVSSASHICR TCNKSFNSHQ  300
ALGGHMTGHK NDLMTAAKVD AISVACNTEE VRYGNSNAAE SKPLPETDAT CSKAEMVHQC  360
KTCNKTFPSG QALGGHQRCH WNGGVEASMN SVKLQEDENR VVRQIRNFDL NEPAMVEDED  420
DIALALGITK RLDSIESGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	3e-17	C2H2 family protein