PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR92712.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

ARF

Protein Properties

Length: 731aa MW: 81538.2 Da PI: 6.5114

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR92712.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.8	8.7e-23	177	277	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++ +++a+e+ ++++ ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + +++el RWR92712.1 177 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQHPP--WQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RGENGEL 271 99***************************654444..458*********************************************..449999 PP EEEEE- CS B3 93 vvkvfr 98 +v+v+r RWR92712.1 272 RVGVRR 277 ****97 PP
2	Auxin_resp	113.3	2.3e-37	303	385	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seF+++v+k++++ ++++svGmRf+m+fe+++++err+sGt++gv d+ + rW +S+WrsLk RWR92712.1 303 ASHAISTGTLFSVFYKPRTSQSEFIISVNKYLESRNHNFSVGMRFRMRFEGDEAPERRFSGTIIGVGDTISQRWADSEWRSLK 385 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence
MLFQINLPEG IVQKQLRPLF WALAIVSNHL LKSTGGGLKA ERWLISTCME IFGKQASGSN 60 ALKLPCASGD VFYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTH QGLDQPMPSF 120 NLPSKILCKV MNVQLRAETE TDEVYAQITL LPEQDHGEIT SPDPPLPEPQ RCTVHSFCKT 180 LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ HPPWQELVAT DLHGNEWHFR HIFRGQPRRH 240 LLTTGWSVFV SSKRLVAGDA FIFLRGENGE LRVGVRRLMR QLNNMPSSVI SSHSMHLGVL 300 ATASHAISTG TLFSVFYKPR TSQSEFIISV NKYLESRNHN FSVGMRFRMR FEGDEAPERR 360 FSGTIIGVGD TISQRWADSE WRSLKVQWDE PSSIPRPERV SPWELEPLVA SNPPTSQPTP 420 RNKRARPMAP PSTPEHPVFG LWKSTDKTAS SFPYSGLQQG REQYPLPTSK LLSQIPKAGS 480 FEFAGSNAPA AIPSDPMFWS NRVESIPESV VTGVGRVSGE KKQETGNGYR IFGFQLVDSS 540 PVEDTAIPAT VYGGVGEDLP VRSLDPDLDR QSQPSNTTSD NPAASSEPEK SCLRSPQEML 600 SRQIRSCTKV HMQGLAVGRA VDLTRFDCYD DLLRKLEEMF DIEGELRGHT KKWQVAYTDD 660 EEDMMLVGDD PWHEFCSMVR KIYIHTSEEA KRLTPKSTLS INAELKPGKL AAEPDVAPST 720 LDDQCSVGNG C

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence

MLFQINLPEG IVQKQLRPLF WALAIVSNHL LKSTGGGLKA ERWLISTCME IFGKQASGSN  60
ALKLPCASGD VFYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTH QGLDQPMPSF  120
NLPSKILCKV MNVQLRAETE TDEVYAQITL LPEQDHGEIT SPDPPLPEPQ RCTVHSFCKT  180
LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ HPPWQELVAT DLHGNEWHFR HIFRGQPRRH  240
LLTTGWSVFV SSKRLVAGDA FIFLRGENGE LRVGVRRLMR QLNNMPSSVI SSHSMHLGVL  300
ATASHAISTG TLFSVFYKPR TSQSEFIISV NKYLESRNHN FSVGMRFRMR FEGDEAPERR  360
FSGTIIGVGD TISQRWADSE WRSLKVQWDE PSSIPRPERV SPWELEPLVA SNPPTSQPTP  420
RNKRARPMAP PSTPEHPVFG LWKSTDKTAS SFPYSGLQQG REQYPLPTSK LLSQIPKAGS  480
FEFAGSNAPA AIPSDPMFWS NRVESIPESV VTGVGRVSGE KKQETGNGYR IFGFQLVDSS  540
PVEDTAIPAT VYGGVGEDLP VRSLDPDLDR QSQPSNTTSD NPAASSEPEK SCLRSPQEML  600
SRQIRSCTKV HMQGLAVGRA VDLTRFDCYD DLLRKLEEMF DIEGELRGHT KKWQVAYTDD  660
EEDMMLVGDD PWHEFCSMVR KIYIHTSEEA KRLTPKSTLS INAELKPGKL AAEPDVAPST  720
LDDQCSVGNG C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	0.0	ARF family protein