PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR92579.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 515aa    MW: 56203 Da    PI: 5.2267
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR92579.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.89.6e-971165011374
        GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaal........klfsevs 88 
                 lv+lL+++Aea++  ++   l++ +L rl+el+sp+  ++m+Rlaayf+eAL+  l +++ +  +  +  + s+++  ++ +          +l  ++s
  RWR92579.1 116 LVHLLIAAAEALTGANKCqdLVRVILVRLKELVSPTVgSNMERLAAYFAEALQGVLEGTGGHAKHPGANHQYSDNHRHKSPSPSppperrfgRLPADMS 214
                 68**********998876569***********9998659*******************8888888777777765553333222256666555889**** PP

        GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg..ppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnv 180
                 P++kf+h+taNqaIleav++++rvHi+D+di++G+QW++L+qaL sR+eg  +p+lRiT++ +   +     s  +++etg+rL  fA+++g pf+f+ 
  RWR92579.1 215 PYVKFGHFTANQAILEAVAQDRRVHIVDYDIMEGIQWASLMQALVSRKEGfpAPHLRITALTRGGGSgggrrSIGTVQETGRRLVAFAASIGQPFSFHQ 313
                 ************************************************654488********95544899999999*********************** PP

        GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                    +  e++++++L++ +gEal+Vn++l+l ++  +s ++ s   ++L+   +l P+++++ve+ea+  s+ F+ rf+++l++ysal+dslea++p + 
  RWR92579.1 314 CRLDPEENFRPSSLKMVKGEALIVNCMLHLPHFSYRSPDSVS---SFLSGAAGLGPRLITLVEEEAEPASTGFVGRFVDSLHHYSALYDSLEAGFPMQG 409
                 9999*****************************988888888...9***************************************************** PP

        GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                 ++r+ vE+++lg++i   va + ++    +    +W ++l   GF+pv +s ++ +qaklll  ++ dgyrvee  s+ +vlgWk+r+L+s+S+W+
  RWR92579.1 410 RARALVEKVFLGPRIAGSVARSYRA---PEGDECSWGNWLAGEGFRPVGISFFNHCQAKLLLGLFN-DGYRVEEVaSNKIVLGWKSRSLLSASVWT 501
                 ***********************99...4444579*******************************.******76499999**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    
MELAIEGGEF GEFGDMDFYI SSSSNTTTAI TTPTSMEDEI QCEWNNWAPV IDWQLLSDDN  60
NFFMESMMDE GFEEGVQVHE SSNSVTTTTT ATPTTSSTSD MIEEDTSDED SKGLRLVHLL  120
IAAAEALTGA NKCQDLVRVI LVRLKELVSP TVGSNMERLA AYFAEALQGV LEGTGGHAKH  180
PGANHQYSDN HRHKSPSPSP PPERRFGRLP ADMSPYVKFG HFTANQAILE AVAQDRRVHI  240
VDYDIMEGIQ WASLMQALVS RKEGFPAPHL RITALTRGGG SGGGRRSIGT VQETGRRLVA  300
FAASIGQPFS FHQCRLDPEE NFRPSSLKMV KGEALIVNCM LHLPHFSYRS PDSVSSFLSG  360
AAGLGPRLIT LVEEEAEPAS TGFVGRFVDS LHHYSALYDS LEAGFPMQGR ARALVEKVFL  420
GPRIAGSVAR SYRAPEGDEC SWGNWLAGEG FRPVGISFFN HCQAKLLLGL FNDGYRVEEV  480
ASNKIVLGWK SRSLLSASVW TSSSPSQSSV RDSGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277285RGGGSGGGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-129GRAS family protein