PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR92322.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

FAR1

Protein Properties

Length: 856aa MW: 98651.3 Da PI: 6.5572

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR92322.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.2	1.5e-24	92	180	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn++++ GFs+rk++s+k k++g +++r+fvCs+eg+r+ +k++ ++ r++r etrtgC ++v + ++gk++vt ++ +HnH+l+ RWR92322.1 92 NFYNQFGRLRGFSIRKHNSTKDKKTGLVKMRKFVCSNEGFRRVDKRD-SNVRHHRDETRTGCLGYMMVVLGENGKYRVTIFNDDHNHPLV 180 6*****************************************999.999***********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence
MQCRSRSMET RDLNACCKQH EEMDVVPQVR DQLDSNSEVS NNNLKEAIVP KDDKCEDDLV 60 KSDVAMDDKG GVEGIIKPKV GMEFETVDDA YNFYNQFGRL RGFSIRKHNS TKDKKTGLVK 120 MRKFVCSNEG FRRVDKRDSN VRHHRDETRT GCLGYMMVVL GENGKYRVTI FNDDHNHPLV 180 DQDKTHMLRS QRKVALSQAA GDDDCDHSGK KPKQGEENAG VLPVNYKYYL RSKRMKAIEM 240 SDADGLLSYF RRKKVEDRMF FYSIQVDIDD RITNIFWADG RMLIDYEHFG DVVCFDTTYR 300 TNGYSRPFAP FIGINHHKQI VMFGAALLFD ETAESFGWLL RTFCDAMGGK KPQTILTDED 360 KLMSTAIEEE FPGTVHRICV WHVFQNALEQ LDHVFHDSKS FYEDFSKCMY DYDEEEEFLA 420 AWDKMLEQYE LRDNTWLTKL FNEKEKWALV YGRSTFSADI ISALCNGSMN EELKKYLDPE 480 NKITDFFDHF ERLLDDRRNA ESEANFSMAQ SSPHTKLPVS ILKHAADVYT LKIFKMFETE 540 YANGLDWQVE ETSDVGTLKK YFVFNQKGHK HIVTFDPTDE SITCSCKKFE FVGILCGHAL 600 KATIHKLKRI PTKYILKRWT REAACSLKLS SSECKPKALS SRYSVLLRGF VRIAAKAAES 660 EERFECAAKL TELMLSEIEK ISRNKGPTDN LIGEECMVDE VVREDNDVEV MVDNAQSKEV 720 DEINRKENCH DGHWMENCLE KGSPKRRRKK LSKPTSTIPS NSSPNPMHYH APNHPPTLIS 780 QGPYGNGANP VHYHVPTHPS AFISHGPYGS EMMPVYYNDQ YHTSPHPSTL ISQENLRANY 840 FQHFPQKSSD DRQGPI

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence

MQCRSRSMET RDLNACCKQH EEMDVVPQVR DQLDSNSEVS NNNLKEAIVP KDDKCEDDLV  60
KSDVAMDDKG GVEGIIKPKV GMEFETVDDA YNFYNQFGRL RGFSIRKHNS TKDKKTGLVK  120
MRKFVCSNEG FRRVDKRDSN VRHHRDETRT GCLGYMMVVL GENGKYRVTI FNDDHNHPLV  180
DQDKTHMLRS QRKVALSQAA GDDDCDHSGK KPKQGEENAG VLPVNYKYYL RSKRMKAIEM  240
SDADGLLSYF RRKKVEDRMF FYSIQVDIDD RITNIFWADG RMLIDYEHFG DVVCFDTTYR  300
TNGYSRPFAP FIGINHHKQI VMFGAALLFD ETAESFGWLL RTFCDAMGGK KPQTILTDED  360
KLMSTAIEEE FPGTVHRICV WHVFQNALEQ LDHVFHDSKS FYEDFSKCMY DYDEEEEFLA  420
AWDKMLEQYE LRDNTWLTKL FNEKEKWALV YGRSTFSADI ISALCNGSMN EELKKYLDPE  480
NKITDFFDHF ERLLDDRRNA ESEANFSMAQ SSPHTKLPVS ILKHAADVYT LKIFKMFETE  540
YANGLDWQVE ETSDVGTLKK YFVFNQKGHK HIVTFDPTDE SITCSCKKFE FVGILCGHAL  600
KATIHKLKRI PTKYILKRWT REAACSLKLS SSECKPKALS SRYSVLLRGF VRIAAKAAES  660
EERFECAAKL TELMLSEIEK ISRNKGPTDN LIGEECMVDE VVREDNDVEV MVDNAQSKEV  720
DEINRKENCH DGHWMENCLE KGSPKRRRKK LSKPTSTIPS NSSPNPMHYH APNHPPTLIS  780
QGPYGNGANP VHYHVPTHPS AFISHGPYGS EMMPVYYNDQ YHTSPHPSTL ISQENLRANY  840
FQHFPQKSSD DRQGPI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	744	751	PKRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-126	FAR1 family protein