PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR91711.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 840aa MW: 91379.1 Da PI: 8.5594

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR91711.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.0009	224	245	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F + n++rHir+H RWR91711.1 224 KCDKCSREFCSFINYRRHIRVH 245 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 840 aa Download sequence
MLSAFPFSLS PPQSIRRFKG FSLLSIPLQF PQQDLRAIFF KSTVRRPIFD SQLMVTSKPV 60 ASCNPVAMTS EQKTGKSEKD VHDSLENVIR QAIVKDSFQS LSTASDYRRQ WSQSFPALEQ 120 GASKFSKGQK VDGPDRKDWP LEYCNGVSSF ASETNGIKDS LHPLSSLRGS GNSVKGTKNP 180 SENMQSFKLP EAVVAFAQAA AKTNGEPEKY LHGWPLMSPP QMQKCDKCSR EFCSFINYRR 240 HIRVHRRSLN VDKLSLAEAE EIVSFKDVVL EEVAGSSIIK ALASYTRKLG FSSLPLVYVK 300 AGCCSARPPR FPISSQDFFS ILDDASEKTF LCAGTALSVQ KFVFDGDAGK IGLEMKNLVA 360 CTSFLVEQKL VKAWIADKDA EALRCQKLLV EEEEAAQKRQ AELMERKRLK KLRQKEQRAR 420 EQIDGDKADL NVSSYTADCG SSAEMSNLPS ESGLNFADVS SNSVPLLPPM PAQFMDAVAE 480 VGVVCDLNHG DTDMEGSADL ASSQNVDAQA HFQHRESQRK ITVARRSSPK LSRNNPNGFH 540 PVQLPALKSV TVQKHNYRDQ RSASSSNGHK VWTPKTKLGG EEEASNVRGL IETGDQLDPS 600 SGSEVLIGSI SVMLGDRGSP QQDDFSAPAL DHSVADHQNL RRNSAQVKHV KPDASQNVVE 660 RSMAKLWRPV SRHDIGGPVV LQGNEREDRV DGISENAVDL SGGSPVVCSS SDDSSSGCKD 720 SLTVAANRAL TDLRISSCVA TAKAFLEQRW KGALAVGLVL SSKAEPPDCH ENLGSRSAAA 780 VLSLPSEGCV QSASSNTENQ LAGVGPAMPI AATAGSTPKF RAKAEKGSRL KYVPKQRTRS

Sequence ? help Back to Top

Protein Sequence Length: 840 aa Download sequence

MLSAFPFSLS PPQSIRRFKG FSLLSIPLQF PQQDLRAIFF KSTVRRPIFD SQLMVTSKPV  60
ASCNPVAMTS EQKTGKSEKD VHDSLENVIR QAIVKDSFQS LSTASDYRRQ WSQSFPALEQ  120
GASKFSKGQK VDGPDRKDWP LEYCNGVSSF ASETNGIKDS LHPLSSLRGS GNSVKGTKNP  180
SENMQSFKLP EAVVAFAQAA AKTNGEPEKY LHGWPLMSPP QMQKCDKCSR EFCSFINYRR  240
HIRVHRRSLN VDKLSLAEAE EIVSFKDVVL EEVAGSSIIK ALASYTRKLG FSSLPLVYVK  300
AGCCSARPPR FPISSQDFFS ILDDASEKTF LCAGTALSVQ KFVFDGDAGK IGLEMKNLVA  360
CTSFLVEQKL VKAWIADKDA EALRCQKLLV EEEEAAQKRQ AELMERKRLK KLRQKEQRAR  420
EQIDGDKADL NVSSYTADCG SSAEMSNLPS ESGLNFADVS SNSVPLLPPM PAQFMDAVAE  480
VGVVCDLNHG DTDMEGSADL ASSQNVDAQA HFQHRESQRK ITVARRSSPK LSRNNPNGFH  540
PVQLPALKSV TVQKHNYRDQ RSASSSNGHK VWTPKTKLGG EEEASNVRGL IETGDQLDPS  600
SGSEVLIGSI SVMLGDRGSP QQDDFSAPAL DHSVADHQNL RRNSAQVKHV KPDASQNVVE  660
RSMAKLWRPV SRHDIGGPVV LQGNEREDRV DGISENAVDL SGGSPVVCSS SDDSSSGCKD  720
SLTVAANRAL TDLRISSCVA TAKAFLEQRW KGALAVGLVL SSKAEPPDCH ENLGSRSAAA  780
VLSLPSEGCV QSASSNTENQ LAGVGPAMPI AATAGSTPKF RAKAEKGSRL KYVPKQRTRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	405	412	ERKRLKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-73	C2H2 family protein