PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR91453.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 327aa MW: 37643.4 Da PI: 9.7557

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR91453.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.2	3.4e-19	183	237	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le++F+++++++ ++++eLA++l+L rqV vWFqNrRa+ k RWR91453.1 183 RKKLRLTKEQSDLLEDCFKEHSTLTLRRKQELAEQLNLRPRQVEVWFQNRRARTK 237 788899***********************************************98 PP
2	HD-ZIP_I/II	116.8	1.2e-37	183	271	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq+ lLE++F+e+++L+ +rK+ela++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l++en+rL+ke +eLr+ RWR91453.1 183 RKKLRLTKEQSDLLEDCFKEHSTLTLRRKQELAEQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCENLSKENRRLKKELQELRS 271 69*************************************************************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MIVINPFQGI LEKESDLGRV VSPCSGHSFS LWQHYGRKLQ LKTSQSGFVK LADLNNQGKK 60 PLLQFLLFNS FPIKNSNPNA PVPFIIYPFT KARRASTPKK NNTHLTISSL LWDKIMEDDA 120 CNTQLVLGVG NGQAPLQYHL LFPPHRNSVD REEEGNRWDA KMADEEDDGE RNGSFNERES 180 NTRKKLRLTK EQSDLLEDCF KEHSTLTLRR KQELAEQLNL RPRQVEVWFQ NRRARTKLKQ 240 TEVDCELLKK CCENLSKENR RLKKELQELR SMKLGSPLLL QLPKVAAKTV NMCPSCERVV 300 AFDQKAMKVE FIAPTIKDAS MTCQKLF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	188	TRKKLRL
2	232	240	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	6e-56	HD-ZIP family protein