PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR91430.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

SBP

Protein Properties

Length: 357aa MW: 40231.8 Da PI: 8.427

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR91430.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.2	1.5e-40	148	226	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC++dl++ak+yhrrh+vCe+hska++vl + g+eqrfCqqCsrfh+l efDe krsCr+rLa+hn+rrrk+q+ RWR91430.1 148 RCQAEGCKVDLTNAKHYHRRHRVCEFHSKATKVLlAGGIEQRFCQQCSRFHALAEFDEVKRSCRKRLADHNRRRRKPQP 226 6*****************************9834679***********************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MNSSPTSEEA TVCGNWNSSS SSIMSFVGLE SNTHKQFWDW DNNTHNPNIN HPLIIPASTS 60 FIDFSSSTPS PPTNFPQSYA QITHFPVAET GFLKREDGCF GVDVGSQSNG RIGLNLGHRT 120 YFSSRETAVI DRLFRRTRGF YQANQIPRCQ AEGCKVDLTN AKHYHRRHRV CEFHSKATKV 180 LLAGGIEQRF CQQCSRFHAL AEFDEVKRSC RKRLADHNRR RRKPQPGTTS DSPARKTPQN 240 GIEKNQETEK TRASSYALLM TRDHKASNQE ELQFEQKAAV TQLQKGPSLS LSGAGLVEKC 300 SESQITYTHQ PFSSPPPFFD RGSVSPSSCM MDSHQQQPEE LQNLLQLGHA MFEVEFL

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MNSSPTSEEA TVCGNWNSSS SSIMSFVGLE SNTHKQFWDW DNNTHNPNIN HPLIIPASTS  60
FIDFSSSTPS PPTNFPQSYA QITHFPVAET GFLKREDGCF GVDVGSQSNG RIGLNLGHRT  120
YFSSRETAVI DRLFRRTRGF YQANQIPRCQ AEGCKVDLTN AKHYHRRHRV CEFHSKATKV  180
LLAGGIEQRF CQQCSRFHAL AEFDEVKRSC RKRLADHNRR RRKPQPGTTS DSPARKTPQN  240
GIEKNQETEK TRASSYALLM TRDHKASNQE ELQFEQKAAV TQLQKGPSLS LSGAGLVEKC  300
SESQITYTHQ PFSSPPPFFD RGSVSPSSCM MDSHQQQPEE LQNLLQLGHA MFEVEFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	224	KRSCRKRLADHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	5e-50	SBP family protein