PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR91141.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 428aa MW: 45414.7 Da PI: 7.5049

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR91141.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.8e-12	246	291	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq RWR91141.1 246 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 291 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MQDRKMQGMS ASLNPSQIPP LQQQHQHNQM QSSQIQLQQQ NQNQSLHFDQ PSSHDDLFDQ 60 IQMLSNLSSS SSWSDLSSNP KSSPFLSLLS QSSPKLRHLS DDNLHLPYDD SALLAARLRQ 120 HQITAGTDVA SPTQLLLSRA GAGTGIARSP STAGDTAGLL PLPLTLGSNE SSDSAGEGPV 180 QGLFSNGFGG SLSRNAQTAN QQQFHRPQTG SIPSQNFGAP AAGINQPPAP ARQRVRARRG 240 QATDPHSIAE RLRRERIAER MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS 300 RLGGAAAVAP LVADISSEAS GMGRSINGAQ TASSNDSLTV TEHQVAKMME EDMGSAMQYL 360 QGKGLCLMPI SLATAISSHP RAHNPSLGPT HTADVPSSPS MSVLTVQSAM GNGGGETSVK 420 EAASVSKP

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MQDRKMQGMS ASLNPSQIPP LQQQHQHNQM QSSQIQLQQQ NQNQSLHFDQ PSSHDDLFDQ  60
IQMLSNLSSS SSWSDLSSNP KSSPFLSLLS QSSPKLRHLS DDNLHLPYDD SALLAARLRQ  120
HQITAGTDVA SPTQLLLSRA GAGTGIARSP STAGDTAGLL PLPLTLGSNE SSDSAGEGPV  180
QGLFSNGFGG SLSRNAQTAN QQQFHRPQTG SIPSQNFGAP AAGINQPPAP ARQRVRARRG  240
QATDPHSIAE RLRRERIAER MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS  300
RLGGAAAVAP LVADISSEAS GMGRSINGAQ TASSNDSLTV TEHQVAKMME EDMGSAMQYL  360
QGKGLCLMPI SLATAISSHP RAHNPSLGPT HTADVPSSPS MSVLTVQSAM GNGGGETSVK  420
EAASVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	251	256	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-58	bHLH family protein