PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR91040.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 429aa MW: 48774 Da PI: 6.7936

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR91040.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.9	3.5e-16	182	228	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v ++G + W+ Ia+++ gR +kqc++rw+++l RWR91040.1 182 KGQWTIEEDRLLLHLVDKYGIRKWSHIAQMLR-GRIGKQCRERWHNHL 228 799***************************.***********97 PP
2	Myb_DNA-binding	54	3.7e-17	234	276	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd +l++a+k+ G++ W+ I ++++ gRt++++k++w+ RWR91040.1 234 KDTWSEEEDMILIQAHKEIGNK-WAEIGKRLP-GRTENSIKNHWN 276 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MEIDTIYQEG SPLGSALNLN NYLKPVQRGA FSLGACHSNG FQEYYNLDQF LDEGLLSDSK 60 LGGPPSSLFD SLQALANGWK STFDTGVCMN AVDDGRNRMD VGIFQSRNAV NYMVRAIAGA 120 GNEQEHGHEF SFKGIEHMNS IFHDEMSFVN GAKKLYGEEG VKKNLKTLKR NEKLRKKSNQ 180 IKGQWTIEED RLLLHLVDKY GIRKWSHIAQ MLRGRIGKQC RERWHNHLRP NIKKDTWSEE 240 EDMILIQAHK EIGNKWAEIG KRLPGRTENS IKNHWNATKR SQLSRRRCRS SKYPKPSSLL 300 QNYIKSITSS SMENLEDTYK NPTASTTMTN SDHSRPETSD SSGSDQLVPD FDFSNVPNVP 360 LDANIWTETC DIGYLVDEMM IMMPYAGIVG EGFMEIDMPL DTTACFMPSV NVKREMDSLE 420 MITQSNNLF

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MEIDTIYQEG SPLGSALNLN NYLKPVQRGA FSLGACHSNG FQEYYNLDQF LDEGLLSDSK  60
LGGPPSSLFD SLQALANGWK STFDTGVCMN AVDDGRNRMD VGIFQSRNAV NYMVRAIAGA  120
GNEQEHGHEF SFKGIEHMNS IFHDEMSFVN GAKKLYGEEG VKKNLKTLKR NEKLRKKSNQ  180
IKGQWTIEED RLLLHLVDKY GIRKWSHIAQ MLRGRIGKQC RERWHNHLRP NIKKDTWSEE  240
EDMILIQAHK EIGNKWAEIG KRLPGRTENS IKNHWNATKR SQLSRRRCRS SKYPKPSSLL  300
QNYIKSITSS SMENLEDTYK NPTASTTMTN SDHSRPETSD SSGSDQLVPD FDFSNVPNVP  360
LDANIWTETC DIGYLVDEMM IMMPYAGIVG EGFMEIDMPL DTTACFMPSV NVKREMDSLE  420
MITQSNNLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-66	MYB family protein