PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR90505.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 590aa MW: 63888.6 Da PI: 9.0401

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR90505.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H RWR90505.1 76 FICEVCNKGFQREQNLQLHRRGH 98 89*******************88 PP
2	zf-C2H2	12.5	0.00045	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ RWR90505.1 152 WKCDKCSKRYAVQSDWKAHSKTC 174 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence
MAAASSSTPF FSIREEDQIQ NKQQQQQQQQ NSTPTSSTAP SSTAPQKKKR NLPGTPNPDA 60 EVIALSPKTL MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLRQKSTK EVKRKVYLCP 120 EPTCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYR 180 CDCGTLFSRR DSFITHRAFC DALAQESARL PSGLNTLGGQ LYGNNNMSLG LSQVGSQISS 240 IQGQNPPSTD LLRLGGSAGV SQFDHLIPPS NQSSFRPPHS APSSAFFLPS SDQDFHEEPQ 300 SHHSVLQSKP SFHGLMQLPD LQNNPNNSSS ATANLFNLGF FPNSSSSINN SNNADNNNQS 360 NNHLRNTGLM IPDQFSNGNS SSEAAAMFSS NMIGNHMGSG VSSLYHPSMQ NDTILPQMSA 420 TALLQKAAQM GASTSGNNIL RGFGSSYSSS SAKQERPHIS AGFKGNFSSG GDENLRSQLE 480 NESHFQDLLM NSLASGNSSM FGGGSAFGSG CTSGGHEQDT GYGGFGASRN LSNMGASDRL 540 TRDFLGVGGM VRRTASQREQ HHLGIDIGSL DSEMKSSPTM NQPFGGGNLQ

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence

MAAASSSTPF FSIREEDQIQ NKQQQQQQQQ NSTPTSSTAP SSTAPQKKKR NLPGTPNPDA  60
EVIALSPKTL MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLRQKSTK EVKRKVYLCP  120
EPTCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYR  180
CDCGTLFSRR DSFITHRAFC DALAQESARL PSGLNTLGGQ LYGNNNMSLG LSQVGSQISS  240
IQGQNPPSTD LLRLGGSAGV SQFDHLIPPS NQSSFRPPHS APSSAFFLPS SDQDFHEEPQ  300
SHHSVLQSKP SFHGLMQLPD LQNNPNNSSS ATANLFNLGF FPNSSSSINN SNNADNNNQS  360
NNHLRNTGLM IPDQFSNGNS SSEAAAMFSS NMIGNHMGSG VSSLYHPSMQ NDTILPQMSA  420
TALLQKAAQM GASTSGNNIL RGFGSSYSSS SAKQERPHIS AGFKGNFSSG GDENLRSQLE  480
NESHFQDLLM NSLASGNSSM FGGGSAFGSG CTSGGHEQDT GYGGFGASRN LSNMGASDRL  540
TRDFLGVGGM VRRTASQREQ HHLGIDIGSL DSEMKSSPTM NQPFGGGNLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-113	C2H2 family protein