PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR90488.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family ARF
Protein Properties Length: 907aa    MW: 101499 Da    PI: 6.5058
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR90488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.1e-23127228199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  RWR90488.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 221
                 99*****************************86555544..8************************************************..8899999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  RWR90488.1 222 LLGIRRA 228
                 ****997 PP
2Auxin_resp119.72.3e-39253336183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldp+rWpnS+Wrs+k
  RWR90488.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPIRWPNSHWRSVK 336
                 79********************************87599******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    
MKLSTSGLAQ QAQDGERRCL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAASTNKE  60
VDGHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDT YLPAELGVPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPAQELIAR DLHDVEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL SKYVKAVFHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPIRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSLFP LRLKRPWHPG IPSFHDNKED ESNGFMWMRG DAGEQGLQPM NYQSFGLGHW  420
MQQRLDPLPL ANQHDQYQAM AAAALQDIRS GDPLKQQFLS FQQPFQYSQQ LCRSNPLLQQ  480
QIFQQIQPQQ ILPAQTHNLS ENQSRNHLLQ HQLPQTFNDQ QKQQAQQQEA YQKTFQISND  540
QIQQQQSHLP TALLQKSVFP DSTGTFSTAP TPSCIQNMLG TLCPEGNANL MNFQKMGQSM  600
MSEPHQPSWV PDFPMSQVSS FGSSLLLPPF PGKDNALEPQ HCTADSQTHT LFGVNIDSSP  660
VLPTQVPNLS NGAIDTDVSI PVASSSFQNS LYGCMDDSSG LLQNVGQVDP ASCTFVKVYK  720
SGSVGRSLDI TRFSSYHELR EELGRMFGIE GQLENPLRSG WQLVFVDREN DVLLLGDDPW  780
EAFVNNVWYI KILSPEDVLK LGKQDVESLN LTGGQKLSNS SCEAPNHVSG ISSVHLNIDG  840
YKETLPELVT LKLLNAHPCL QPHSCLCADM YVMLSVVKLV IGILLKLMLQ ISLLEVVHSQ  900
VLCIGIY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein