PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR90182.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 917aa MW: 102310 Da PI: 7.0793

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR90182.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.8	1.6e-07	176	195	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 Cr+fa+ G+C++G++C+F H RWR90182.1 176 QCRDFAA-GWCRRGGQCRFLH 195 5****.*********** PP
2	zf-CCCH	19.3	2e-06	272	292	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 e+C++f++ G C++G+ Ck+ H RWR90182.1 272 ERCDDFLK-GKCHRGSACKYVH 292 89****.*********** PP
3	zf-CCCH	24.4	4.9e-08	338	357	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC++fa+ G C+ G++CkF+H RWR90182.1 338 LCKYFAE-GRCRNGEKCKFSH 357 9****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 917 aa Download sequence
MESALGGETV TEKVKKRVSK WDLVEDTKCP TESARDNFKS ADVADAHHDK DANSGCNWSK 60 SVSSHVSKWS DWEANNTMKS EDSSGGSCCE PMLEHKGEGK YIIVDEDGEK ISQTTRTRGA 120 SITSHIDLGR HHSHSRSGSP GWGRSCSRSR SPHGFKYEAE SWNNRGRSGR GGSIAQCRDF 180 AAGWCRRGGQ CRFLHQDDRD YDGKGHCDRV PFENRGRRLE RRRFSRYESN EAFTDSQEQS 240 GYSRDKDLHA YESHNVGDRG KHETQRNHRS SERCDDFLKG KCHRGSACKY VHHGANVDGC 300 GGWPSKDTTR HRAHNRREDL PFEHDQRHEP HRSTMDTLCK YFAEGRCRNG EKCKFSHQGP 360 TFGGPEENSQ DGGWGNSSVS RNRPGGDLKR IDNSSGARVG CPENVSRSNP KWGDKDADRN 420 VSSSPLCSDT INIRADDPWN RSCEGPRWDD KPAETDFSVS PQRMSNDDGA RRVPESRAAD 480 LFSNVTDMGS AGVNRDGYSL NMGKNETIHG SQDSYTWSPE ADGQQLPVQK VGAVVFPSKD 540 RQSQQKIPPP NVPNFNPSLQ SQQLAHALLD GLNVNLNRQS QLMAPPLPSG QMDPNGQSQG 600 INVRSSSTDQ AQMPFCHGDS SEKHDLTSDV SIPQNAATTE KEAQLTDLSV SLAQIFGNGQ 660 QLPQLYATLN HLSATGLVPT QPPQSNPVRP SAPVAAPFIQ PKQVPWPQSQ NDPLTYSIEF 720 VNPDINKQPT RFPMNTHEQK NTSLEQLQAP QQILASSSGT DSQNEGELPE NGSLEKPNHE 780 KQDNQHGLKM DTEVVEVKEV ATVQCEKDQQ TGQLKEIDMD DQVNDEGKRS KDAKEMRMFK 840 FALVEFVKEL LKPTWKEGHM SKEAHKTIVK KVVDKVTGSL HGPHIPQTQE RIDHYLSFSK 900 PKLTKLVQAY VEKYLKT

Sequence ? help Back to Top

Protein Sequence Length: 917 aa Download sequence

MESALGGETV TEKVKKRVSK WDLVEDTKCP TESARDNFKS ADVADAHHDK DANSGCNWSK  60
SVSSHVSKWS DWEANNTMKS EDSSGGSCCE PMLEHKGEGK YIIVDEDGEK ISQTTRTRGA  120
SITSHIDLGR HHSHSRSGSP GWGRSCSRSR SPHGFKYEAE SWNNRGRSGR GGSIAQCRDF  180
AAGWCRRGGQ CRFLHQDDRD YDGKGHCDRV PFENRGRRLE RRRFSRYESN EAFTDSQEQS  240
GYSRDKDLHA YESHNVGDRG KHETQRNHRS SERCDDFLKG KCHRGSACKY VHHGANVDGC  300
GGWPSKDTTR HRAHNRREDL PFEHDQRHEP HRSTMDTLCK YFAEGRCRNG EKCKFSHQGP  360
TFGGPEENSQ DGGWGNSSVS RNRPGGDLKR IDNSSGARVG CPENVSRSNP KWGDKDADRN  420
VSSSPLCSDT INIRADDPWN RSCEGPRWDD KPAETDFSVS PQRMSNDDGA RRVPESRAAD  480
LFSNVTDMGS AGVNRDGYSL NMGKNETIHG SQDSYTWSPE ADGQQLPVQK VGAVVFPSKD  540
RQSQQKIPPP NVPNFNPSLQ SQQLAHALLD GLNVNLNRQS QLMAPPLPSG QMDPNGQSQG  600
INVRSSSTDQ AQMPFCHGDS SEKHDLTSDV SIPQNAATTE KEAQLTDLSV SLAQIFGNGQ  660
QLPQLYATLN HLSATGLVPT QPPQSNPVRP SAPVAAPFIQ PKQVPWPQSQ NDPLTYSIEF  720
VNPDINKQPT RFPMNTHEQK NTSLEQLQAP QQILASSSGT DSQNEGELPE NGSLEKPNHE  780
KQDNQHGLKM DTEVVEVKEV ATVQCEKDQQ TGQLKEIDMD DQVNDEGKRS KDAKEMRMFK  840
FALVEFVKEL LKPTWKEGHM SKEAHKTIVK KVVDKVTGSL HGPHIPQTQE RIDHYLSFSK  900
PKLTKLVQAY VEKYLKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-16	C3H family protein