PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89909.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 327aa MW: 36709.6 Da PI: 6.2531

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89909.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.2	4.3e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv+ ++++G g+W++ ++ g++R++k+c++rw +yl RWR89909.1 14 KGPWTPEEDKKLVQFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.1	3.5e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++teE++ +++++ lG++ W++Ia +++ gRt++++k++w++ RWR89909.1 67 RGKFSTEEEQTILNLHSILGNK-WSAIAMHLP-GRTDNEIKNFWNTN 111 89******************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MGRAPSCDEN GLKKGPWTPE EDKKLVQFIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF STEEEQTILN LHSILGNKWS AIAMHLPGRT DNEIKNFWNT NLKKKLIQMG 120 IDPMTHRPRT DFFSTLPELI ALSNLKGAVD NNPLEEHAVR LQEAIQLAKY QYIQYLIQSA 180 VSMTGNSNNS PNSIAEMDAI NLMSSLPSPR ETLGLNPSQL ENSTQCFLGV ADAQPLNGQI 240 PAYTPPQDLP YPWDFMPPMI NETKQESNFP QLSQGDYTPR SPLLPSPPPT IGETSISNLA 300 DSYTTSIYDG NNPPFWPDLL LEDSFFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-105	MYB family protein