PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89805.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 351aa MW: 39327.4 Da PI: 4.9552

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89805.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++Fs+ L H+r+H RWR89805.1 4 HTCKLCSRTFSNGRALGGHMRSH 26 79********************9 PP
2	zf-C2H2	12.6	0.00042	221	243	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H RWR89805.1 221 YQCGTCKKVFRSYQALGGHRASH 243 9***********99999998887 PP
3	zf-C2H2	11.5	0.00094	274	296	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++F++ L H r+H RWR89805.1 274 HECPVCFRVFKSGQALGGHKRSH 296 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MEKHTCKLCS RTFSNGRALG GHMRSHVTAL SPSPNLQKIL PESAEEEVEE INESSPSFSS 60 ASEEEEDDNE RRAQAQAQYY GLRENPKKSF RIVDPEFFAI DEGSVIQDRE SETESSKNHL 120 RKRSKRKRRS IHSVPNHKAE PEPEPEPVSS ISYTTPEEDV ARSLMMLSRD IWMRGSTKPF 180 DLSEEEEEEQ VQVVEEEEEE EEEDNDEEEE LRSCPRGRSK YQCGTCKKVF RSYQALGGHR 240 ASHKKIRTCA PPPPAARFAG ADSTARNADH RRIHECPVCF RVFKSGQALG GHKRSHVTAA 300 AAAASPSASA ATVFNMIDLN LPAPVEDDDF SQLELSAVSQ ADFIDDPIPV K

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MEKHTCKLCS RTFSNGRALG GHMRSHVTAL SPSPNLQKIL PESAEEEVEE INESSPSFSS  60
ASEEEEDDNE RRAQAQAQYY GLRENPKKSF RIVDPEFFAI DEGSVIQDRE SETESSKNHL  120
RKRSKRKRRS IHSVPNHKAE PEPEPEPVSS ISYTTPEEDV ARSLMMLSRD IWMRGSTKPF  180
DLSEEEEEEQ VQVVEEEEEE EEEDNDEEEE LRSCPRGRSK YQCGTCKKVF RSYQALGGHR  240
ASHKKIRTCA PPPPAARFAG ADSTARNADH RRIHECPVCF RVFKSGQALG GHKRSHVTAA  300
AAAASPSASA ATVFNMIDLN LPAPVEDDDF SQLELSAVSQ ADFIDDPIPV K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	128	KRSKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	9e-35	C2H2 family protein