PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89802.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 454aa MW: 49680 Da PI: 6.5505

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89802.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.5	2.8e-14	274	320	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+i +++ +L++l+P++ +K +Ka++L +++eY+k+Lq RWR89802.1 274 VHNQSERKRRDKIGQRMKTLQKLVPNS-----RKIDKASVLDEVIEYLKQLQ 320 6***********************9.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MLAPARELEE NTNKPILAFH AYPNAHSTPP HDPMSDYEVA ELTWENGQLV MHGFGFPRTL 60 SKPSSSSPIK SNWENPRVGG TLECIVDQAT CPPPPDAGAD DHFTWFHHHC TPADTAIDVL 120 APCSTRPTDA GAAKNSSRVP GPPLVASSTM VGSCSGAGFD FDRIEEEAFS AAKHTRGAAP 180 ASNEISSHMM QSTTYGSESR GHVETETTWD MDLDVNVDFT STSHGYSSLL GMPMPLSSYG 240 HGSRDESENG CEEEEKGKKE KSTVSTKRSR AAAVHNQSER KRRDKIGQRM KTLQKLVPNS 300 RKIDKASVLD EVIEYLKQLQ TQVTMMSSFP HMMMPMTTMR QLQMSMMARM GMGAMDINSL 360 NRLGPTASVP PMVHHPATLL PLTVPWDGSV VRLHPSATGV LPDAFSTFFD CQTMPHPPQQ 420 QQQPISLDAY NRMTALYKQA QQPTTPSGKT SGLL

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MLAPARELEE NTNKPILAFH AYPNAHSTPP HDPMSDYEVA ELTWENGQLV MHGFGFPRTL  60
SKPSSSSPIK SNWENPRVGG TLECIVDQAT CPPPPDAGAD DHFTWFHHHC TPADTAIDVL  120
APCSTRPTDA GAAKNSSRVP GPPLVASSTM VGSCSGAGFD FDRIEEEAFS AAKHTRGAAP  180
ASNEISSHMM QSTTYGSESR GHVETETTWD MDLDVNVDFT STSHGYSSLL GMPMPLSSYG  240
HGSRDESENG CEEEEKGKKE KSTVSTKRSR AAAVHNQSER KRRDKIGQRM KTLQKLVPNS  300
RKIDKASVLD EVIEYLKQLQ TQVTMMSSFP HMMMPMTTMR QLQMSMMARM GMGAMDINSL  360
NRLGPTASVP PMVHHPATLL PLTVPWDGSV VRLHPSATGV LPDAFSTFFD CQTMPHPPQQ  420
QQQPISLDAY NRMTALYKQA QQPTTPSGKT SGLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	284	ERKRRD
2	280	285	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	9e-56	bHLH family protein