PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89603.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HB-other

Protein Properties

Length: 1861aa MW: 207030 Da PI: 4.8776

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89603.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.3	5.5e-18	19	73	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++q++ Le+ ++ yps+++r+eL++klgLt+rq ++WF+ rR k++k RWR89603.1 19 KRKMKTASQIQLLEKTYAVATYPSEAMRAELSAKLGLTDRQLQMWFCHRRLKDRK 73 89999************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1861 aa Download sequence
METGEGEKKR PGEGDKSTKR KMKTASQIQL LEKTYAVATY PSEAMRAELS AKLGLTDRQL 60 QMWFCHRRLK DRKDAGTKRP RKEAAAAAGD EAVGVPEPAN ELGLGTAHGS GSGSFGQGEG 120 RRALPRAVGA AVPRVGGDLP MLKRYYEPPQ AISELRAIAF VESQLGEPLR EDGPVLGVEF 180 DPLPPDAFGA PLAMTSQQNQ AMRPYESKMF ERQDPKSIKT SSFLPSMDHC FVPSSSGGKR 240 KAAFGNVPGV HPQTGARAAL HEYQFLPEQP SVRPDIYERV APSHLYDTPV DAPIGRVPAL 300 SAGGPYHHGN EQAAAGYNFQ GQVPNVGILS QQGRQSHVFS SGSTEYETVP NKNPLMNIGT 360 DAQFGTHPII GLENPFVSSR RVSLDDDPSR MERKRKTDEA RIAKEVEAHE KRIRKELEKQ 420 DILRRKSISC GLISEILYVK REEQMRREME KHDRERRKEE ERLLREKQRE EERFQREQRR 480 ENERRERFLQ KESLRAEKMR QKEEVRKERE AARQKAANER ATARRIARES MELIEDERLE 540 LMELAASSKG LTSIVSLDGD ALQHLDLFRD MLSEFPPTSV LLKRPFAVHP WRDSEENVGN 600 LLMVWKFLIT FADALELWPF TLDEFVQAFH DYDPRLLGEI HVALLKSIIK DIEDVARTPS 660 IGLGANQNSA ANPGGGHPQI VEGAYAWGFD IRSWQCHLNP LTWPEILRQF ALSAGFGPQL 720 KKRSVRGTYF RDDNEGHDGE DIVSTLRNGA AAENAVAIMQ EKGFSHRRRS RHRLTPGTVK 780 FAAFHVLSLE GAKGLTILEV ADKIQKSGLR DLTTSKTPEA SIAAALSRDA ALFERTAPST 840 YCVRAPFRKD PADANAILSA AREKIQIFHS SRFSDSEEAE KDVEEGDDVE RDDDSESDGA 900 EDPEVDDLGT LATPNKEVLH SNDIKGAQEA GCSRNGKVDA VCNDTTVALH ALGSVGKSFS 960 SFPVEGSRDI SSSSGMNGQP LDLSNADQDD TEIDESNSGE PWVQGLMEGE YSDLSVEERL 1020 NALVALIGVA IEGNSIRVIL EERLEAANAL KKQMWAEAQL DKRRMKEEYM TKLQYSSFTG 1080 TKAEMNLTGS AVDGNHSPLP CLDNNKGAEA SPNQATKQEP YSDPHNIQYS YNNIPTEKNM 1140 LGHEVSVPPD NLTSQQYSYA AEKSRSQLKS YIGHQAEEMY VYRSLPLGQD RRRNRYWKFA 1200 TSSSRNDPGS GRIFFESHDG CWRLIDSEEV FDALLASLDT RGIRESHLHS MLQKIETSFK 1260 ETIQRSLHFN KAVDPTQVSV KDEDAEMASG TDCSMGTDSI GSTVCCLNSD GVEVSPSFRI 1320 EIGKNDTEKS DALKRYQDLH KWLWKECFNT SILCALKYGK KRCPELLVTC DICYDLYLSE 1380 EKHCPSCHKT FATTLNLHIK FSEHVLYCEK RNVDFNRNIR ASNSSLPTRT QMLKAQLTLI 1440 EASIPTEALQ PFWTEVHRKS WGVKLLSSSS ADDLFQLLTL LECSVKRDCL SSNFETTKEL 1500 LGSSMTGYLL DENASLPSSV PVLPWVPQTT AAVALRLMDF DASISYMLQQ KVESHKDKEA 1560 GEFIKLPSRY AVVKNIQELE PAGTAEQADY EQEIWVEPGS GRNSVRGRGS RGRGRGRSRG 1620 GRGQRGSGSS RAEYGRENPW KRDKPVQKQG RRPRSRGRGR KRGRRTVRRK KPENKVVEKK 1680 TVLGGFGDMD HVKQMHDRES PRSSGGEEWD GEEVGRMYAE GDDNSAGISE SDENVQASGD 1740 EYDDQGGADF ANIYDDKLEP DESEENDGDE EGDGNVDVGI DDDEDGDVGM DEDDGDGGME 1800 EDDRDGGMDD DDDGDGDGDG DEEGEGEGEG EGEGDGDEDE DEDGNVDEDE GTASMSSGYS 1860 D

Sequence ? help Back to Top

Protein Sequence Length: 1861 aa Download sequence

METGEGEKKR PGEGDKSTKR KMKTASQIQL LEKTYAVATY PSEAMRAELS AKLGLTDRQL  60
QMWFCHRRLK DRKDAGTKRP RKEAAAAAGD EAVGVPEPAN ELGLGTAHGS GSGSFGQGEG  120
RRALPRAVGA AVPRVGGDLP MLKRYYEPPQ AISELRAIAF VESQLGEPLR EDGPVLGVEF  180
DPLPPDAFGA PLAMTSQQNQ AMRPYESKMF ERQDPKSIKT SSFLPSMDHC FVPSSSGGKR  240
KAAFGNVPGV HPQTGARAAL HEYQFLPEQP SVRPDIYERV APSHLYDTPV DAPIGRVPAL  300
SAGGPYHHGN EQAAAGYNFQ GQVPNVGILS QQGRQSHVFS SGSTEYETVP NKNPLMNIGT  360
DAQFGTHPII GLENPFVSSR RVSLDDDPSR MERKRKTDEA RIAKEVEAHE KRIRKELEKQ  420
DILRRKSISC GLISEILYVK REEQMRREME KHDRERRKEE ERLLREKQRE EERFQREQRR  480
ENERRERFLQ KESLRAEKMR QKEEVRKERE AARQKAANER ATARRIARES MELIEDERLE  540
LMELAASSKG LTSIVSLDGD ALQHLDLFRD MLSEFPPTSV LLKRPFAVHP WRDSEENVGN  600
LLMVWKFLIT FADALELWPF TLDEFVQAFH DYDPRLLGEI HVALLKSIIK DIEDVARTPS  660
IGLGANQNSA ANPGGGHPQI VEGAYAWGFD IRSWQCHLNP LTWPEILRQF ALSAGFGPQL  720
KKRSVRGTYF RDDNEGHDGE DIVSTLRNGA AAENAVAIMQ EKGFSHRRRS RHRLTPGTVK  780
FAAFHVLSLE GAKGLTILEV ADKIQKSGLR DLTTSKTPEA SIAAALSRDA ALFERTAPST  840
YCVRAPFRKD PADANAILSA AREKIQIFHS SRFSDSEEAE KDVEEGDDVE RDDDSESDGA  900
EDPEVDDLGT LATPNKEVLH SNDIKGAQEA GCSRNGKVDA VCNDTTVALH ALGSVGKSFS  960
SFPVEGSRDI SSSSGMNGQP LDLSNADQDD TEIDESNSGE PWVQGLMEGE YSDLSVEERL  1020
NALVALIGVA IEGNSIRVIL EERLEAANAL KKQMWAEAQL DKRRMKEEYM TKLQYSSFTG  1080
TKAEMNLTGS AVDGNHSPLP CLDNNKGAEA SPNQATKQEP YSDPHNIQYS YNNIPTEKNM  1140
LGHEVSVPPD NLTSQQYSYA AEKSRSQLKS YIGHQAEEMY VYRSLPLGQD RRRNRYWKFA  1200
TSSSRNDPGS GRIFFESHDG CWRLIDSEEV FDALLASLDT RGIRESHLHS MLQKIETSFK  1260
ETIQRSLHFN KAVDPTQVSV KDEDAEMASG TDCSMGTDSI GSTVCCLNSD GVEVSPSFRI  1320
EIGKNDTEKS DALKRYQDLH KWLWKECFNT SILCALKYGK KRCPELLVTC DICYDLYLSE  1380
EKHCPSCHKT FATTLNLHIK FSEHVLYCEK RNVDFNRNIR ASNSSLPTRT QMLKAQLTLI  1440
EASIPTEALQ PFWTEVHRKS WGVKLLSSSS ADDLFQLLTL LECSVKRDCL SSNFETTKEL  1500
LGSSMTGYLL DENASLPSSV PVLPWVPQTT AAVALRLMDF DASISYMLQQ KVESHKDKEA  1560
GEFIKLPSRY AVVKNIQELE PAGTAEQADY EQEIWVEPGS GRNSVRGRGS RGRGRGRSRG  1620
GRGQRGSGSS RAEYGRENPW KRDKPVQKQG RRPRSRGRGR KRGRRTVRRK KPENKVVEKK  1680
TVLGGFGDMD HVKQMHDRES PRSSGGEEWD GEEVGRMYAE GDDNSAGISE SDENVQASGD  1740
EYDDQGGADF ANIYDDKLEP DESEENDGDE EGDGNVDVGI DDDEDGDVGM DEDDGDGGME  1800
EDDRDGGMDD DDDGDGDGDG DEEGEGEGEG EGEGDGDEDE DEDGNVDEDE GTASMSSGYS  1860
D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	74	RRLKDRKD
2	1652	1662	RPRSRGRGRKR
3	1654	1664	RPRSRGRGRKR
4	1658	1671	RGRKRGRRTVRRKK
5	1660	1673	RGRKRGRRTVRRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein