PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89537.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 378aa MW: 42346.6 Da PI: 6.928

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89537.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41	3.4e-13	175	226	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N + Lr+l+P++ + ++ + a+i+ A++++k+L+ RWR89537.1 175 QRMTHIAVERNRRKQMNAHLTALRSLMPSS---YIQRGDQASIVGGAIDFVKELE 226 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MNSECLEQGN ALNFAFGSFL TAESMRFVEH FSSPSYGEDK MSVIQMPSSD PNFQLLLKLE 60 QLKRPNTNTH FHEPESRVPP LELESCVTHV SESHSPVKSE TKEHPHPHSS PFPEVVSSFC 120 NLEPNSPEIY KHARSSSIQI SNQTNPQFAN PPPAREKKKR KRTRPFKNSE EVESQRMTHI 180 AVERNRRKQM NAHLTALRSL MPSSYIQRGD QASIVGGAID FVKELEQLLQ SLQAQKQMRK 240 SGEEGYNPVS ATPFSGFFSS PQYTAYSSQQ PHLNFISNSY LEGGGSDSTA ESLANIEVTV 300 IQTHVNLKIL SRNRPGQLLR AIAALEDVFL TILHLNVTSL EHSVLYSFSL KIEEGCKLGS 360 ADEIARAVYQ IFSLVDSN

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MNSECLEQGN ALNFAFGSFL TAESMRFVEH FSSPSYGEDK MSVIQMPSSD PNFQLLLKLE  60
QLKRPNTNTH FHEPESRVPP LELESCVTHV SESHSPVKSE TKEHPHPHSS PFPEVVSSFC  120
NLEPNSPEIY KHARSSSIQI SNQTNPQFAN PPPAREKKKR KRTRPFKNSE EVESQRMTHI  180
AVERNRRKQM NAHLTALRSL MPSSYIQRGD QASIVGGAID FVKELEQLLQ SLQAQKQMRK  240
SGEEGYNPVS ATPFSGFFSS PQYTAYSSQQ PHLNFISNSY LEGGGSDSTA ESLANIEVTV  300
IQTHVNLKIL SRNRPGQLLR AIAALEDVFL TILHLNVTSL EHSVLYSFSL KIEEGCKLGS  360
ADEIARAVYQ IFSLVDSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	163	KKRKRT
2	176	187	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	9e-56	bHLH family protein