PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89496.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Trihelix

Protein Properties

Length: 725aa MW: 79658.4 Da PI: 4.961

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89496.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	98.6	5.5e-31	90	174	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++ ++++f+qlea RWR89496.1 90 RWPRQETLALLKIRSDMDAAFRDATLKGPLWEDVSRKLAELGYSRSAKKCKEKFENVQKYYKRTKEGRAGRQDGR--SYRFFSQLEA 174 8*******************************************************************86555..5*****85 PP
2	trihelix	110.2	1.3e-34	460	545	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+evl+Li++r+ +e+r++++ k+plWee+s+ m++rg++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a RWR89496.1 460 RWPKSEVLELIQLRSGLESRYQEAGPKGPLWEEISAGMQRRGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHQLDA 545 8*******************************************************************8.99999******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence
MQQGGSQYGV SPDMTASFAG TRVLDPVQQQ QQLMQQQKPG DAALAEAASP ISSRPPARGN 60 FDELGSVPGG FPDEEALAGE ETERGLTGNR WPRQETLALL KIRSDMDAAF RDATLKGPLW 120 EDVSRKLAEL GYSRSAKKCK EKFENVQKYY KRTKEGRAGR QDGRSYRFFS QLEALHSSTT 180 PAPTTAAAPI PPATSNPMVG SSSTRIQPPP ASATTSAPTQ IGIQRIGPDL TVDPTAPGIS 240 GPAPAAAAAA VGGISFSSDT SSESGSESEE EMEEGPSTGS RKRKRSESSG GSRKLMAFFQ 300 GLMSQVMEKQ EAMQQRFLEA MEKREQDRMI REEAWKRQEM TRLAREHEIL AQERAMAASR 360 DAAIIAFLQK LTGQTIQIPQ LVAIPTMPVP PQPQPHPHPH PKADPPPPPP PPAPVPQQQI 420 QQSQNTEKSR QQPSSTELVL VQHEQQLEIG GSFDPVSSSR WPKSEVLELI QLRSGLESRY 480 QEAGPKGPLW EEISAGMQRR GYNRSAKRCK EKWENINKYF KKVKESNKKR PEDAKTCPYF 540 HQLDALYKKK ILGGGSTSTS SLTTHNKQEQ DMSPNPQERT DILAIMPPPP PPPPSQPQAE 600 TETKSSSTSN KNGGNTEGGS SLQVQTSNGG FPPSFFEEGP LKKPEDIVKE LMDQQQAAMD 660 NYKDSNDLNQ EEDDGDEDED EDENDDDEDE DEDKDDKKMA FKIEFQSKNS SNGGNPSSSF 720 LAMVQ

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence

MQQGGSQYGV SPDMTASFAG TRVLDPVQQQ QQLMQQQKPG DAALAEAASP ISSRPPARGN  60
FDELGSVPGG FPDEEALAGE ETERGLTGNR WPRQETLALL KIRSDMDAAF RDATLKGPLW  120
EDVSRKLAEL GYSRSAKKCK EKFENVQKYY KRTKEGRAGR QDGRSYRFFS QLEALHSSTT  180
PAPTTAAAPI PPATSNPMVG SSSTRIQPPP ASATTSAPTQ IGIQRIGPDL TVDPTAPGIS  240
GPAPAAAAAA VGGISFSSDT SSESGSESEE EMEEGPSTGS RKRKRSESSG GSRKLMAFFQ  300
GLMSQVMEKQ EAMQQRFLEA MEKREQDRMI REEAWKRQEM TRLAREHEIL AQERAMAASR  360
DAAIIAFLQK LTGQTIQIPQ LVAIPTMPVP PQPQPHPHPH PKADPPPPPP PPAPVPQQQI  420
QQSQNTEKSR QQPSSTELVL VQHEQQLEIG GSFDPVSSSR WPKSEVLELI QLRSGLESRY  480
QEAGPKGPLW EEISAGMQRR GYNRSAKRCK EKWENINKYF KKVKESNKKR PEDAKTCPYF  540
HQLDALYKKK ILGGGSTSTS SLTTHNKQEQ DMSPNPQERT DILAIMPPPP PPPPSQPQAE  600
TETKSSSTSN KNGGNTEGGS SLQVQTSNGG FPPSFFEEGP LKKPEDIVKE LMDQQQAAMD  660
NYKDSNDLNQ EEDDGDEDED EDENDDDEDE DEDKDDKKMA FKIEFQSKNS SNGGNPSSSF  720
LAMVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	2e-47	Trihelix family protein