PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89462.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Trihelix

Protein Properties

Length: 649aa MW: 73806.9 Da PI: 5.5942

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89462.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	105.7	3.2e-33	421	505	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r+++e+++++ lk+plWe+vs+ m++ g++rs+k+Ckekwen+nk+++k+k+++kkr s++s+tcpyf+ql+ RWR89462.1 421 RWPKAEVQALIRVRSSLETKFQEPGLKGPLWEQVSSSMASMGYQRSAKRCKEKWENINKYFRKTKDSAKKR-SQQSKTCPYFHQLD 505 8*******************************************************************8.78889******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence
MQSGYGVPET QQFMMDGCSS SSLLSISQNI TNSSQAPPKQ HMQYHHLHQQ QQQQQQQRFL 60 HIQHQHQHQI PITQPFFQQH HYPQFQTFLQ QHERQLHQES GPDNSHTSRI VGGSGPSFIV 120 TNLKFGVDDN SGLNDYNQVI QGKREDGCVE EPREEDSAIK EPFWKPLDIE YINRNNKRCK 180 ERMETPFEFC KKGEKGIEME EGKSSGSNYG LFGELEAIYT VGGIGNGGNN QTGSGSALTG 240 ENPPATTAVL EPSGDRGGVD HASETSTGEE ASLKLQKSKR KKRRKQLGTI ATFFERLVKQ 300 LMEQQENLHR RFLEVMENRD QERMIREEAW RQQETAKSYR EEKARAEEHA LASSREAAIV 360 AFLEKITGET INLPTKAQFQ NPSQFHEESQ GDEKTIVATD LTNDNTNSNN VSMNNNNISR 420 RWPKAEVQAL IRVRSSLETK FQEPGLKGPL WEQVSSSMAS MGYQRSAKRC KEKWENINKY 480 FRKTKDSAKK RSQQSKTCPY FHQLDQLYSK SHTSSPHSSS SFAAAAAIVE SKDHSELLNA 540 IVVQPENGNS QNPRLEFHQE PINISRGFNF SEMGSLGLDF NRNGSGDDRR KEVGHDEEDE 600 EEEEEEEEDD DDDGVEGDNE EHERNLAVQR EKGGDKHPQE HVVLFGLES

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence

MQSGYGVPET QQFMMDGCSS SSLLSISQNI TNSSQAPPKQ HMQYHHLHQQ QQQQQQQRFL  60
HIQHQHQHQI PITQPFFQQH HYPQFQTFLQ QHERQLHQES GPDNSHTSRI VGGSGPSFIV  120
TNLKFGVDDN SGLNDYNQVI QGKREDGCVE EPREEDSAIK EPFWKPLDIE YINRNNKRCK  180
ERMETPFEFC KKGEKGIEME EGKSSGSNYG LFGELEAIYT VGGIGNGGNN QTGSGSALTG  240
ENPPATTAVL EPSGDRGGVD HASETSTGEE ASLKLQKSKR KKRRKQLGTI ATFFERLVKQ  300
LMEQQENLHR RFLEVMENRD QERMIREEAW RQQETAKSYR EEKARAEEHA LASSREAAIV  360
AFLEKITGET INLPTKAQFQ NPSQFHEESQ GDEKTIVATD LTNDNTNSNN VSMNNNNISR  420
RWPKAEVQAL IRVRSSLETK FQEPGLKGPL WEQVSSSMAS MGYQRSAKRC KEKWENINKY  480
FRKTKDSAKK RSQQSKTCPY FHQLDQLYSK SHTSSPHSSS SFAAAAAIVE SKDHSELLNA  540
IVVQPENGNS QNPRLEFHQE PINISRGFNF SEMGSLGLDF NRNGSGDDRR KEVGHDEEDE  600
EEEEEEEEDD DDDGVEGDNE EHERNLAVQR EKGGDKHPQE HVVLFGLES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	285	KRKKRRK
2	281	285	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-56	Trihelix family protein