PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR89122.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 173aa MW: 19378 Da PI: 5.1184 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.6 | 1.4e-22 | 9 | 52 | 1 | 44 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k+ie+k +rqv fskRr+g++KKA+EL++LCda+va+i fs g RWR89122.1 9 KKIEDKNKRQVCFSKRRQGLFKKASELCTLCDAQVAIIAFSGGG 52 68**************************************9776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence |
MGKRKIEIKK IEDKNKRQVC FSKRRQGLFK KASELCTLCD AQVAIIAFSG GGRPFVFGHP 60 TVDTVINRFL DDKVVNEKQQ LQLPSNEFNG CECGDQVFNL LDEGVDHQSV EELMQLKQEL 120 EGLREKVKVR MKDKSTAASS AADGPQSGQL VTMFDEDEWI FGGLSEIDSA SYL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-25 | M-type_MADS family protein |