PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RWR89060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 1033aa MW: 116557 Da PI: 6.5095 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 124.3 | 5e-39 | 135 | 210 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv++C+++l+++++yhrrhkvCe+h+k+++vl+ g+ qrfCqqCsrfh l+efDeekrsCrr+La+hn+rrrk++ RWR89060.1 135 CQVDDCNVNLNDVRDYHRRHKVCETHAKSTSVLLGGVLQRFCQQCSRFHLLQEFDEEKRSCRRQLAGHNRRRRKNT 210 **************************************************************************86 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1033 aa Download sequence |
MEMPNGSDEM RQMRAPVEHN FMVKGKQVVL EKQNTEWDLN EWKWDGNLFI AERRSFSNAE 60 EVLPIDAVGK DGKAVDKRRK LSVLKDDEFG EGDASLTLKL GGEVKRIEER EDGSCEDKNG 120 KRVKSQSSLL KHPSCQVDDC NVNLNDVRDY HRRHKVCETH AKSTSVLLGG VLQRFCQQCS 180 RFHLLQEFDE EKRSCRRQLA GHNRRRRKNT LDTIVSDHPL KDDQASRYIL FYLLKILTNL 240 QSKNSDHSKD QDLLLQLLRT LSGPKVITEP EILSALAHLL SQTSTEVCAE KDISILSESL 300 RGGATVPEIS AIVRSTAAAS SSISSQDHIM DVTNCMPMNV ARPCQLQVPL PARNPLNEII 360 GSVPLQDTNA VCPIGDGPPR MQSDACYLMP SKEAKVGEQN RTKINDFDLN SSYNESQDCR 420 EGSQKLSQND WKIPQIGHYN FPSWPNQDIP QTITANSSGN SESTSDKSRS SSGEDLRCCT 480 DQIIFKLFGK DPSDLPHVLR AQIQSWLLHS PTNIESHIKP GCLVLTIYTR LSKHVWEELC 540 NNLTSSLKRL LEASDDNFWR TGWICAKVGL QLAFIYDGRV LLDMPLPSSQ DAPSIISVTP 600 VAVDLSEESL FTVKGWNLGR TTTKLLCAFH GKQIVQEIGF DTIEMNGFGS SSDSSESLDG 660 YNVETQTLCF TCSFSKTVGR GFIEVEDHGL GSGFFPFIVA EQEICSELRT LEIIFTSNEM 720 SSRNQVIQFL MEFGWLLERS RHLISRPELT ALRSTEFSSV RFKWLLEFSI DRDWCAVVKK 780 ILDIVFDRRV GGPDLSVDQL LNEVSPLHRA VRRNCRPMVD FLLKYSPEEK RALESSQEIK 840 FSKQTFKSNK KGPAGITPLH IAASIEGADD VLNLLTDDPE QEWVQTWEKD HDASGFTPEN 900 YARQRGHDKY IDLVQRKKTN KASPKHLILD LSSSLPATRR VEESLSMSQG TFVKQKHTAL 960 NVDSRSMEQF KCQACEQMSV YRSGHRFLNY RPAILSMVAI AAVCVCVGLL LKSPPEVLFV 1020 VAFRWELIDY GYM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47070.1 | 1e-155 | SBP family protein |