PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR88898.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 476aa MW: 52477.5 Da PI: 6.95

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR88898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.7e-11	300	345	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N +f Lr ++P+ +++Ka+ L Av YI++L RWR88898.1 300 NHVEAERQRREKLNLRFYALRAVVPNV-----SRMDKASLLADAVTYINEL 345 699*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MEELISSTSS SPTSLFPICN ETLSSLQQSL QLLVQSRPEW WVYAIFWQAS RDPSGSLLLS 60 WADGHFRGSK HMDKFKKNPL HRTGFENTER KKALKGFHAL VGDGICTDMD SSADGDVTDA 120 EWFYVVSLTR TFAVGDGIPG RALSSGSSVW LAGGREMQVY DCERSREANM HGIETLVCIP 180 TSNGVLELGS SDLIQENWSL IQQAKAMFGM GSGLNPVCKP VQPHPTRNLP FADMGLAVGV 240 LGEKAVELKK EGAPTGTAHS SSVESEHSDS EEGGACAAAE VRRPKKRGRK PGNGRDIPLN 300 HVEAERQRRE KLNLRFYALR AVVPNVSRMD KASLLADAVT YINELKQKVE ELNSEARRES 360 KRVKREEIES VVCKSDRAKS SSRSFDGELG SGVAELEVKL IGSDAMIRVQ SRNSNHPAAR 420 TMSALRELEL KVHHASVSSV NELMLQDIVV RIPDGMQLQD EESLKSALLR KMEMMQ

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MEELISSTSS SPTSLFPICN ETLSSLQQSL QLLVQSRPEW WVYAIFWQAS RDPSGSLLLS  60
WADGHFRGSK HMDKFKKNPL HRTGFENTER KKALKGFHAL VGDGICTDMD SSADGDVTDA  120
EWFYVVSLTR TFAVGDGIPG RALSSGSSVW LAGGREMQVY DCERSREANM HGIETLVCIP  180
TSNGVLELGS SDLIQENWSL IQQAKAMFGM GSGLNPVCKP VQPHPTRNLP FADMGLAVGV  240
LGEKAVELKK EGAPTGTAHS SSVESEHSDS EEGGACAAAE VRRPKKRGRK PGNGRDIPLN  300
HVEAERQRRE KLNLRFYALR AVVPNVSRMD KASLLADAVT YINELKQKVE ELNSEARRES  360
KRVKREEIES VVCKSDRAKS SSRSFDGELG SGVAELEVKL IGSDAMIRVQ SRNSNHPAAR  420
TMSALRELEL KVHHASVSSV NELMLQDIVV RIPDGMQLQD EESLKSALLR KMEMMQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	282	290	RRPKKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46830.1	3e-63	bHLH family protein