PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR88771.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family ARF
Protein Properties Length: 875aa    MW: 97071.9 Da    PI: 6.6083
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR88771.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.3e-24127228199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  RWR88771.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 221
                 99*****************************8544444..48************************************************..8899999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  RWR88771.1 222 LLGIRRA 228
                 ****997 PP
2Auxin_resp121.66e-40253336183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  RWR88771.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPYSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 336
                 79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    
MRLSSSGFGQ QPQEGEKRCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPN LPPQLVCQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDA YLPAELGAPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPY SKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIG DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPSLHGGKDD DLGLSSLMWL RGDGADRALQ EIRNVDPLKQ  420
APPSLLQFQQ SQNIPNISAS LLQRQILQQS QPHSSHAFVQ SIQDNLSQSQ SQAHLIQQQL  480
QHQQSFNNQQ QKQQQQQQQQ QQQQQQHQQR MADQQQLPNV ASSLSQLAST TQSQTPLQSI  540
ASLCQQPNFP DSNGHPPATS GVSPLQSLLG TFSSTDASNL LSLPRSSPLI PHSAAWLPKQ  600
VAEPILPSVA QCVIPQVDQL GPPQSTVSQN SVTLPPFPGR ECSVDQEGST DPQSHLLFGV  660
NIDSSSLLLQ NSMSNLRSVG SETDSTTMPF AASNFLTNMG TGFPLNPTMN TSSCLDESVF  720
LQSPDNVGQV ADNVGQGNLP TRTFVKVHKS GSFGRSLDIT RFSSYHELRS ELAHMFGLEG  780
QLEDPMRSGW QLVFVDREND ILLLGDDPWQ EFVNSVWCIK ILSPQEVQEM GQRGRELLNS  840
VPIQRLPSTS CDDYVSRQDS RNLSSGITSV GSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein