PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR88702.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 542aa MW: 60050.5 Da PI: 6.656

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR88702.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.9	1.4e-16	337	384	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq RWR88702.1 337 QVHNLSERRRRDRINEKMKALQELIPNC-----NKSDKASMLDEAIEYLKSLQ 384 57***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MDESRSFPDN SLVSDQKKFK GMDHEVAELL WQNGQVVLNN QTHRKPISTS YESKQVHKAD 60 QPLKGSVPFG NLNSMIQEDE TASWLQYALD DSMEKDFFSD FSYEIPNVDL IKSEKTSKEA 120 ASGAKNTKLA SAEEAHVLVS SSTERSQPVV KQCNNLHSGK NVIPPPKLHI VNSTTCPTLD 180 GGRIINSPNF SMPVKANLGS MNELHRDVEE CSIMPMASSH CGSNQVHNEP NFSQVSSNGV 240 SPMKIYAGDV KEDVRKMFSQ NERGQTETIE MTLTSSSGGS RESDRMEKQT GGNQSHKRKE 300 RDADESECQS EEAEYASVEG NKPAQRSASS RRSRAAQVHN LSERRRRDRI NEKMKALQEL 360 IPNCNKSDKA SMLDEAIEYL KSLQLQLQIM WMGSGMTQMM YPSLQHYLSG MGMGMGMGMG 420 HAPLPSIHGP MQLPRVASIN HSISPVLSNQ TPICTSQVLN PINLQNQVQN ASIPDSYMHY 480 LGIQPMQTAP QTTNLYMYGS ETMQHNLRMA LPNSTSPPSL PTGISPPCNA ILFNKIQNDN 540 LG

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MDESRSFPDN SLVSDQKKFK GMDHEVAELL WQNGQVVLNN QTHRKPISTS YESKQVHKAD  60
QPLKGSVPFG NLNSMIQEDE TASWLQYALD DSMEKDFFSD FSYEIPNVDL IKSEKTSKEA  120
ASGAKNTKLA SAEEAHVLVS SSTERSQPVV KQCNNLHSGK NVIPPPKLHI VNSTTCPTLD  180
GGRIINSPNF SMPVKANLGS MNELHRDVEE CSIMPMASSH CGSNQVHNEP NFSQVSSNGV  240
SPMKIYAGDV KEDVRKMFSQ NERGQTETIE MTLTSSSGGS RESDRMEKQT GGNQSHKRKE  300
RDADESECQS EEAEYASVEG NKPAQRSASS RRSRAAQVHN LSERRRRDRI NEKMKALQEL  360
IPNCNKSDKA SMLDEAIEYL KSLQLQLQIM WMGSGMTQMM YPSLQHYLSG MGMGMGMGMG  420
HAPLPSIHGP MQLPRVASIN HSISPVLSNQ TPICTSQVLN PINLQNQVQN ASIPDSYMHY  480
LGIQPMQTAP QTTNLYMYGS ETMQHNLRMA LPNSTSPPSL PTGISPPCNA ILFNKIQNDN  540
LG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	343	348	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43010.2	4e-35	bHLH family protein