PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR88469.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 284aa    MW: 31465.5 Da    PI: 4.041
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR88469.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.21.1e-131559649
                HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEE CS
      SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyey 49
                k   q  f++R +g++KKA+EL vLC+ ++avi++s+ tgk  ++
  RWR88469.1 15 KKFDQLRFTRRCKGLFKKAQELNVLCGSDIAVIVISNgTGKATTF 59
                5556788*****************************856777776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MGKRKLEIES KKEEKKFDQL RFTRRCKGLF KKAQELNVLC GSDIAVIVIS NGTGKATTFG  60
SPDPNSVINR YRSHKTTNGQ TKLQNSILAR SDEQMIMNDG NHQEKMMMIE DLDLDLEPRE  120
DGSLPNLISS SSSYERGLDD NNDDYWLSLD VDRFLEEIEE EDVNEGSISE RVLAGLMTEI  180
PSSSSFSTIG CGAGQFAPSN GYGLGDTLSS NEFDPTFDVG QFLNEDGGGG PEQDEYGSVT  240
NPISSSSSCE CGFDDNDWLS IDVNKFFEDE EFVRMWVGAV SDQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-10M-type_MADS family protein