PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RWR88451.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 438aa MW: 48060.6 Da PI: 6.5084 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.6 | 5.2e-17 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk++G g+W+++ + g+ R++k+c++rw ++l RWR88451.1 27 KGPWTAAEDAILMEYVKKHGEGNWNAVQKNSGLSRCGKSCRLRWANHL 74 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 48.4 | 2.2e-15 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ l+++++ +lG++ W++ a+ ++ gRt++++k++w++ RWR88451.1 80 KGSFSAEEERLILELHSKLGNK-WARMASQLP-GRTDNEIKNYWNT 123 799*******************.*********.***********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 438 aa Download sequence |
MSPNSTSGGD DSSSGGSGGG RGPALKKGPW TAAEDAILME YVKKHGEGNW NAVQKNSGLS 60 RCGKSCRLRW ANHLRPNLKK GSFSAEEERL ILELHSKLGN KWARMASQLP GRTDNEIKNY 120 WNTRIKRRQR QGLPLYPPDI QRQAAYHHHR QHPSHSLAIP SLQQKNQFSS PGLPLLDPMN 180 FSTVPMPLLT TTTQNPHQSL FPPAPLSIHN RFKRLRENTF MGSSDFSLSY SSSPLPLFQH 240 NLQNQHQHHP FVLGGFEPNG LATSMKMELP SNQFAEPATA SNSNSGLLDA LLQEAQVLSG 300 DLGKEELLGE AVDGKCCWVG DSFPTGQVLF SESGIATSQL ESTSAHSPSI GIEAKKEPTE 360 ENDSVDRDLS ALFDIIPASM PMVSEWYNDN GEMSNAQSSA SDDNIGLEMQ HLTSSLTVSN 420 EQDWSLSSCT WNNMPGIC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G32460.2 | 4e-70 | MYB family protein |